Strain Fitness in Serratia liquefaciens MT49 around IAI46_16665

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16660 and IAI46_16665 overlap by 4 nucleotidesIAI46_16665 and IAI46_16670 are separated by 24 nucleotidesIAI46_16670 and IAI46_16675 are separated by 73 nucleotides IAI46_16660: IAI46_16660 - iron ABC transporter permease, at 3,488,971 to 3,491,199 _16660 IAI46_16665: IAI46_16665 - ABC transporter ATP-binding protein, at 3,491,196 to 3,492,257 _16665 IAI46_16670: IAI46_16670 - inositol monophosphatase family protein, at 3,492,282 to 3,493,070 _16670 IAI46_16675: IAI46_16675 - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,493,144 to 3,494,154 _16675 Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -2 -1 0 1 2at 3490.242 kb on + strand, within IAI46_16660at 3490.242 kb on + strand, within IAI46_16660at 3490.348 kb on + strand, within IAI46_16660at 3490.391 kb on - strand, within IAI46_16660at 3490.391 kb on - strand, within IAI46_16660at 3490.459 kb on + strand, within IAI46_16660at 3490.693 kb on + strand, within IAI46_16660at 3490.694 kb on - strand, within IAI46_16660at 3490.705 kb on + strand, within IAI46_16660at 3490.705 kb on + strand, within IAI46_16660at 3490.987 kb on + strandat 3490.987 kb on + strandat 3491.005 kb on + strandat 3491.005 kb on + strandat 3491.006 kb on - strandat 3491.035 kb on + strandat 3491.053 kb on + strandat 3491.068 kb on - strandat 3491.177 kb on + strandat 3491.177 kb on + strandat 3491.178 kb on - strandat 3491.178 kb on - strandat 3491.178 kb on - strandat 3491.460 kb on + strand, within IAI46_16665at 3491.502 kb on + strand, within IAI46_16665at 3491.503 kb on - strand, within IAI46_16665at 3491.776 kb on - strand, within IAI46_16665at 3491.844 kb on - strand, within IAI46_16665at 3491.875 kb on - strand, within IAI46_16665at 3491.875 kb on - strand, within IAI46_16665at 3491.941 kb on + strand, within IAI46_16665at 3491.942 kb on - strand, within IAI46_16665at 3491.942 kb on - strand, within IAI46_16665at 3491.942 kb on - strand, within IAI46_16665at 3492.053 kb on + strand, within IAI46_16665at 3492.261 kb on + strandat 3492.261 kb on + strandat 3492.262 kb on - strandat 3492.771 kb on + strand, within IAI46_16670at 3492.772 kb on - strand, within IAI46_16670at 3492.772 kb on - strand, within IAI46_16670at 3492.776 kb on + strand, within IAI46_16670at 3492.894 kb on + strand, within IAI46_16670at 3492.895 kb on - strand, within IAI46_16670at 3492.898 kb on - strand, within IAI46_16670at 3492.898 kb on - strand, within IAI46_16670at 3492.906 kb on + strand, within IAI46_16670at 3492.906 kb on + strand, within IAI46_16670at 3492.937 kb on - strand, within IAI46_16670at 3493.048 kb on + strandat 3493.048 kb on + strandat 3493.048 kb on + strandat 3493.083 kb on + strandat 3493.127 kb on - strandat 3493.127 kb on - strandat 3493.145 kb on + strandat 3493.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,490,242 + IAI46_16660 0.57 +0.7
3,490,242 + IAI46_16660 0.57 -0.2
3,490,348 + IAI46_16660 0.62 +0.8
3,490,391 - IAI46_16660 0.64 +2.1
3,490,391 - IAI46_16660 0.64 -0.0
3,490,459 + IAI46_16660 0.67 +0.5
3,490,693 + IAI46_16660 0.77 -1.0
3,490,694 - IAI46_16660 0.77 -0.7
3,490,705 + IAI46_16660 0.78 -1.0
3,490,705 + IAI46_16660 0.78 -0.3
3,490,987 + -1.1
3,490,987 + -1.9
3,491,005 + -0.4
3,491,005 + -2.0
3,491,006 - -0.4
3,491,035 + -0.3
3,491,053 + +1.8
3,491,068 - +0.1
3,491,177 + -0.1
3,491,177 + +0.0
3,491,178 - -1.1
3,491,178 - +0.1
3,491,178 - +0.5
3,491,460 + IAI46_16665 0.25 +0.3
3,491,502 + IAI46_16665 0.29 -0.7
3,491,503 - IAI46_16665 0.29 -0.9
3,491,776 - IAI46_16665 0.55 +0.2
3,491,844 - IAI46_16665 0.61 +0.3
3,491,875 - IAI46_16665 0.64 +1.8
3,491,875 - IAI46_16665 0.64 -0.4
3,491,941 + IAI46_16665 0.70 +0.6
3,491,942 - IAI46_16665 0.70 +1.0
3,491,942 - IAI46_16665 0.70 -1.1
3,491,942 - IAI46_16665 0.70 -0.6
3,492,053 + IAI46_16665 0.81 -0.2
3,492,261 + +0.6
3,492,261 + -0.0
3,492,262 - +0.5
3,492,771 + IAI46_16670 0.62 -0.4
3,492,772 - IAI46_16670 0.62 +0.4
3,492,772 - IAI46_16670 0.62 +0.3
3,492,776 + IAI46_16670 0.63 +0.1
3,492,894 + IAI46_16670 0.78 -0.1
3,492,895 - IAI46_16670 0.78 -0.6
3,492,898 - IAI46_16670 0.78 -0.1
3,492,898 - IAI46_16670 0.78 +2.7
3,492,906 + IAI46_16670 0.79 +0.5
3,492,906 + IAI46_16670 0.79 +1.2
3,492,937 - IAI46_16670 0.83 +0.4
3,493,048 + +0.5
3,493,048 + +0.0
3,493,048 + -0.8
3,493,083 + -0.3
3,493,127 - +0.1
3,493,127 - +0.0
3,493,145 + -0.8
3,493,192 - -0.2

Or see this region's nucleotide sequence