Strain Fitness in Serratia liquefaciens MT49 around IAI46_15900

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15890 and IAI46_15895 are separated by 35 nucleotidesIAI46_15895 and IAI46_15900 are separated by 2 nucleotidesIAI46_15900 and IAI46_15905 are separated by 354 nucleotidesIAI46_15905 and IAI46_15910 are separated by 402 nucleotides IAI46_15890: IAI46_15890 - flagellar type III secretion system pore protein FliP, at 3,336,255 to 3,336,980 _15890 IAI46_15895: IAI46_15895 - flagellar biosynthesis protein FliQ, at 3,337,016 to 3,337,285 _15895 IAI46_15900: IAI46_15900 - flagellar type III secretion system protein FliR, at 3,337,288 to 3,338,070 _15900 IAI46_15905: IAI46_15905 - stationary-phase-induced ribosome-associated protein, at 3,338,425 to 3,338,550 _15905 IAI46_15910: IAI46_15910 - flagellar hook-associated protein FlgL, at 3,338,953 to 3,339,912 _15910 Position (kb) 3337 3338 3339Strain fitness (log2 ratio) -2 -1 0 1at 3336.579 kb on + strand, within IAI46_15890at 3336.580 kb on - strand, within IAI46_15890at 3336.580 kb on - strand, within IAI46_15890at 3336.580 kb on - strand, within IAI46_15890at 3336.580 kb on - strand, within IAI46_15890at 3336.762 kb on + strand, within IAI46_15890at 3336.762 kb on + strand, within IAI46_15890at 3337.241 kb on + strand, within IAI46_15895at 3337.241 kb on + strand, within IAI46_15895at 3337.242 kb on - strand, within IAI46_15895at 3337.242 kb on - strand, within IAI46_15895at 3337.243 kb on + strand, within IAI46_15895at 3337.243 kb on + strand, within IAI46_15895at 3337.244 kb on - strand, within IAI46_15895at 3337.966 kb on - strand, within IAI46_15900at 3337.966 kb on - strand, within IAI46_15900at 3338.269 kb on + strandat 3338.324 kb on - strandat 3338.402 kb on + strandat 3338.589 kb on + strandat 3338.646 kb on + strandat 3338.648 kb on + strandat 3338.648 kb on + strandat 3338.649 kb on - strandat 3338.782 kb on + strandat 3338.834 kb on - strandat 3338.834 kb on - strandat 3338.837 kb on + strandat 3338.837 kb on + strandat 3338.838 kb on - strandat 3338.838 kb on - strandat 3338.840 kb on + strandat 3338.850 kb on + strandat 3338.851 kb on - strandat 3338.882 kb on - strandat 3338.929 kb on - strandat 3339.006 kb on - strandat 3339.038 kb on + strandat 3339.038 kb on + strandat 3339.039 kb on - strandat 3339.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,336,579 + IAI46_15890 0.45 +0.0
3,336,580 - IAI46_15890 0.45 +0.8
3,336,580 - IAI46_15890 0.45 +0.5
3,336,580 - IAI46_15890 0.45 +0.8
3,336,580 - IAI46_15890 0.45 -0.4
3,336,762 + IAI46_15890 0.70 +1.0
3,336,762 + IAI46_15890 0.70 +0.6
3,337,241 + IAI46_15895 0.83 +0.7
3,337,241 + IAI46_15895 0.83 -0.1
3,337,242 - IAI46_15895 0.84 +0.1
3,337,242 - IAI46_15895 0.84 -0.8
3,337,243 + IAI46_15895 0.84 -2.5
3,337,243 + IAI46_15895 0.84 +1.2
3,337,244 - IAI46_15895 0.84 +0.9
3,337,966 - IAI46_15900 0.87 +0.8
3,337,966 - IAI46_15900 0.87 -0.1
3,338,269 + +0.7
3,338,324 - +0.4
3,338,402 + +0.1
3,338,589 + +0.8
3,338,646 + +0.4
3,338,648 + -1.0
3,338,648 + +0.6
3,338,649 - -0.7
3,338,782 + -0.5
3,338,834 - +0.3
3,338,834 - -0.5
3,338,837 + -1.1
3,338,837 + -0.7
3,338,838 - +0.7
3,338,838 - +1.3
3,338,840 + -0.0
3,338,850 + -0.6
3,338,851 - +0.4
3,338,882 - +0.6
3,338,929 - -0.2
3,339,006 - +0.7
3,339,038 + +0.5
3,339,038 + +0.3
3,339,039 - +0.3
3,339,039 - +0.0

Or see this region's nucleotide sequence