Strain Fitness in Serratia liquefaciens MT49 around IAI46_15795

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15790 and IAI46_15795 are separated by 281 nucleotidesIAI46_15795 and IAI46_15800 are separated by 27 nucleotidesIAI46_15800 and IAI46_15805 overlap by 1 nucleotides IAI46_15790: IAI46_15790 - FliC/FljB family flagellin, at 3,316,382 to 3,317,620 _15790 IAI46_15795: IAI46_15795 - flagellar filament capping protein FliD, at 3,317,902 to 3,319,299 _15795 IAI46_15800: IAI46_15800 - flagellar export chaperone FliS, at 3,319,327 to 3,319,737 _15800 IAI46_15805: IAI46_15805 - flagella biosynthesis regulatory protein FliT, at 3,319,737 to 3,320,105 _15805 Position (kb) 3317 3318 3319 3320Strain fitness (log2 ratio) -2 -1 0 1at 3316.940 kb on + strand, within IAI46_15790at 3316.941 kb on - strand, within IAI46_15790at 3316.948 kb on - strand, within IAI46_15790at 3316.951 kb on + strand, within IAI46_15790at 3316.952 kb on - strand, within IAI46_15790at 3316.963 kb on + strand, within IAI46_15790at 3316.964 kb on - strand, within IAI46_15790at 3316.964 kb on - strand, within IAI46_15790at 3316.977 kb on + strand, within IAI46_15790at 3317.018 kb on - strand, within IAI46_15790at 3317.053 kb on + strand, within IAI46_15790at 3317.057 kb on + strand, within IAI46_15790at 3317.081 kb on - strand, within IAI46_15790at 3317.246 kb on - strand, within IAI46_15790at 3317.312 kb on - strand, within IAI46_15790at 3317.330 kb on + strand, within IAI46_15790at 3317.365 kb on + strand, within IAI46_15790at 3317.605 kb on + strandat 3317.610 kb on - strandat 3317.624 kb on - strandat 3317.634 kb on + strandat 3317.635 kb on - strandat 3317.635 kb on - strandat 3317.662 kb on - strandat 3317.665 kb on + strandat 3317.804 kb on + strandat 3317.834 kb on + strandat 3317.885 kb on - strandat 3317.887 kb on + strandat 3317.887 kb on + strandat 3317.897 kb on + strandat 3317.898 kb on - strandat 3317.921 kb on + strandat 3317.998 kb on + strandat 3318.019 kb on + strandat 3318.020 kb on - strandat 3318.041 kb on - strandat 3318.074 kb on - strand, within IAI46_15795at 3318.181 kb on + strand, within IAI46_15795at 3318.181 kb on + strand, within IAI46_15795at 3318.181 kb on + strand, within IAI46_15795at 3318.181 kb on + strand, within IAI46_15795at 3318.182 kb on - strand, within IAI46_15795at 3318.240 kb on + strand, within IAI46_15795at 3318.378 kb on + strand, within IAI46_15795at 3318.504 kb on + strand, within IAI46_15795at 3318.504 kb on + strand, within IAI46_15795at 3318.504 kb on + strand, within IAI46_15795at 3318.505 kb on - strand, within IAI46_15795at 3318.505 kb on - strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.757 kb on + strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.758 kb on - strand, within IAI46_15795at 3318.759 kb on + strand, within IAI46_15795at 3318.760 kb on - strand, within IAI46_15795at 3318.780 kb on + strand, within IAI46_15795at 3318.796 kb on + strand, within IAI46_15795at 3318.855 kb on + strand, within IAI46_15795at 3318.886 kb on - strand, within IAI46_15795at 3319.147 kb on - strand, within IAI46_15795at 3319.147 kb on - strand, within IAI46_15795at 3319.207 kb on - strandat 3319.217 kb on - strandat 3319.219 kb on - strandat 3319.297 kb on + strandat 3319.330 kb on + strandat 3319.330 kb on + strandat 3319.330 kb on + strandat 3319.330 kb on + strandat 3319.331 kb on - strandat 3319.331 kb on - strandat 3319.331 kb on - strandat 3319.354 kb on + strandat 3319.516 kb on - strand, within IAI46_15800at 3319.592 kb on - strand, within IAI46_15800at 3319.592 kb on - strand, within IAI46_15800at 3319.597 kb on + strand, within IAI46_15800at 3319.597 kb on + strand, within IAI46_15800at 3319.598 kb on - strand, within IAI46_15800at 3319.598 kb on - strand, within IAI46_15800at 3319.598 kb on - strand, within IAI46_15800at 3319.599 kb on + strand, within IAI46_15800at 3319.600 kb on - strand, within IAI46_15800at 3319.600 kb on - strand, within IAI46_15800at 3319.678 kb on - strand, within IAI46_15800at 3319.678 kb on - strand, within IAI46_15800at 3319.711 kb on + strandat 3319.712 kb on - strandat 3319.735 kb on + strandat 3319.779 kb on + strand, within IAI46_15805at 3319.779 kb on + strand, within IAI46_15805at 3319.779 kb on + strand, within IAI46_15805at 3319.780 kb on - strand, within IAI46_15805at 3319.782 kb on - strand, within IAI46_15805at 3319.854 kb on + strand, within IAI46_15805at 3319.854 kb on + strand, within IAI46_15805at 3319.934 kb on + strand, within IAI46_15805at 3320.052 kb on + strand, within IAI46_15805at 3320.134 kb on + strandat 3320.139 kb on - strandat 3320.151 kb on + strandat 3320.152 kb on - strandat 3320.152 kb on - strandat 3320.155 kb on - strandat 3320.176 kb on - strandat 3320.198 kb on - strandat 3320.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,316,940 + IAI46_15790 0.45 -0.7
3,316,941 - IAI46_15790 0.45 +0.5
3,316,948 - IAI46_15790 0.46 +0.3
3,316,951 + IAI46_15790 0.46 +0.4
3,316,952 - IAI46_15790 0.46 -1.1
3,316,963 + IAI46_15790 0.47 +0.1
3,316,964 - IAI46_15790 0.47 +0.6
3,316,964 - IAI46_15790 0.47 +0.9
3,316,977 + IAI46_15790 0.48 +0.1
3,317,018 - IAI46_15790 0.51 -0.3
3,317,053 + IAI46_15790 0.54 +1.2
3,317,057 + IAI46_15790 0.54 -0.3
3,317,081 - IAI46_15790 0.56 +0.1
3,317,246 - IAI46_15790 0.70 -1.7
3,317,312 - IAI46_15790 0.75 -0.2
3,317,330 + IAI46_15790 0.77 -0.5
3,317,365 + IAI46_15790 0.79 -0.1
3,317,605 + +1.1
3,317,610 - +0.1
3,317,624 - +1.0
3,317,634 + +0.5
3,317,635 - +0.3
3,317,635 - +0.6
3,317,662 - -0.5
3,317,665 + -0.2
3,317,804 + +0.8
3,317,834 + -0.5
3,317,885 - +0.6
3,317,887 + -0.7
3,317,887 + -0.5
3,317,897 + +0.4
3,317,898 - +0.4
3,317,921 + -1.0
3,317,998 + +0.3
3,318,019 + -0.8
3,318,020 - +0.5
3,318,041 - -0.1
3,318,074 - IAI46_15795 0.12 +0.5
3,318,181 + IAI46_15795 0.20 -0.6
3,318,181 + IAI46_15795 0.20 +0.0
3,318,181 + IAI46_15795 0.20 -0.4
3,318,181 + IAI46_15795 0.20 +0.1
3,318,182 - IAI46_15795 0.20 -0.8
3,318,240 + IAI46_15795 0.24 +0.3
3,318,378 + IAI46_15795 0.34 -1.6
3,318,504 + IAI46_15795 0.43 -0.0
3,318,504 + IAI46_15795 0.43 +0.0
3,318,504 + IAI46_15795 0.43 +0.6
3,318,505 - IAI46_15795 0.43 +0.5
3,318,505 - IAI46_15795 0.43 -0.2
3,318,757 + IAI46_15795 0.61 +0.9
3,318,757 + IAI46_15795 0.61 -1.2
3,318,757 + IAI46_15795 0.61 +0.4
3,318,757 + IAI46_15795 0.61 -0.1
3,318,757 + IAI46_15795 0.61 +0.4
3,318,757 + IAI46_15795 0.61 +0.1
3,318,758 - IAI46_15795 0.61 +0.0
3,318,758 - IAI46_15795 0.61 -0.3
3,318,758 - IAI46_15795 0.61 -1.5
3,318,758 - IAI46_15795 0.61 +1.2
3,318,758 - IAI46_15795 0.61 +0.6
3,318,759 + IAI46_15795 0.61 +0.7
3,318,760 - IAI46_15795 0.61 +0.4
3,318,780 + IAI46_15795 0.63 +1.3
3,318,796 + IAI46_15795 0.64 -1.2
3,318,855 + IAI46_15795 0.68 +0.6
3,318,886 - IAI46_15795 0.70 -1.6
3,319,147 - IAI46_15795 0.89 +1.0
3,319,147 - IAI46_15795 0.89 -0.6
3,319,207 - +0.0
3,319,217 - +0.2
3,319,219 - +0.9
3,319,297 + -0.8
3,319,330 + -1.1
3,319,330 + -0.7
3,319,330 + +0.2
3,319,330 + -0.2
3,319,331 - -0.1
3,319,331 - -1.6
3,319,331 - -0.2
3,319,354 + +0.4
3,319,516 - IAI46_15800 0.46 +0.7
3,319,592 - IAI46_15800 0.64 -0.2
3,319,592 - IAI46_15800 0.64 +0.4
3,319,597 + IAI46_15800 0.66 -1.6
3,319,597 + IAI46_15800 0.66 -1.0
3,319,598 - IAI46_15800 0.66 -0.2
3,319,598 - IAI46_15800 0.66 -0.4
3,319,598 - IAI46_15800 0.66 +0.6
3,319,599 + IAI46_15800 0.66 +0.3
3,319,600 - IAI46_15800 0.66 +0.2
3,319,600 - IAI46_15800 0.66 -0.2
3,319,678 - IAI46_15800 0.85 +0.4
3,319,678 - IAI46_15800 0.85 +0.7
3,319,711 + -1.0
3,319,712 - -0.0
3,319,735 + +0.0
3,319,779 + IAI46_15805 0.11 +0.0
3,319,779 + IAI46_15805 0.11 -0.2
3,319,779 + IAI46_15805 0.11 -0.2
3,319,780 - IAI46_15805 0.12 -2.0
3,319,782 - IAI46_15805 0.12 -2.1
3,319,854 + IAI46_15805 0.32 +1.2
3,319,854 + IAI46_15805 0.32 -0.5
3,319,934 + IAI46_15805 0.53 -0.6
3,320,052 + IAI46_15805 0.85 +0.8
3,320,134 + +0.5
3,320,139 - +1.1
3,320,151 + +0.5
3,320,152 - -0.2
3,320,152 - -0.7
3,320,155 - +0.5
3,320,176 - -1.1
3,320,198 - -0.2
3,320,264 - +0.6

Or see this region's nucleotide sequence