Strain Fitness in Serratia liquefaciens MT49 around IAI46_14200

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14190 and IAI46_14195 are separated by 11 nucleotidesIAI46_14195 and IAI46_14200 are separated by 14 nucleotidesIAI46_14200 and IAI46_14205 are separated by 83 nucleotides IAI46_14190: IAI46_14190 - ABC transporter ATP-binding protein, at 3,010,888 to 3,011,904 _14190 IAI46_14195: IAI46_14195 - oligopeptide ABC transporter permease OppC, at 3,011,916 to 3,012,824 _14195 IAI46_14200: IAI46_14200 - oligopeptide ABC transporter permease OppB, at 3,012,839 to 3,013,759 _14200 IAI46_14205: IAI46_14205 - oligopeptide ABC transporter substrate-binding protein OppA, at 3,013,843 to 3,015,480 _14205 Position (kb) 3012 3013 3014Strain fitness (log2 ratio) -2 -1 0 1at 3011.918 kb on - strandat 3012.073 kb on - strand, within IAI46_14195at 3012.136 kb on - strand, within IAI46_14195at 3012.152 kb on - strand, within IAI46_14195at 3012.309 kb on - strand, within IAI46_14195at 3012.519 kb on - strand, within IAI46_14195at 3012.577 kb on + strand, within IAI46_14195at 3012.634 kb on + strand, within IAI46_14195at 3012.690 kb on + strand, within IAI46_14195at 3012.840 kb on + strandat 3012.841 kb on - strandat 3012.945 kb on + strand, within IAI46_14200at 3012.946 kb on - strand, within IAI46_14200at 3013.101 kb on - strand, within IAI46_14200at 3013.204 kb on + strand, within IAI46_14200at 3013.207 kb on - strand, within IAI46_14200at 3013.517 kb on - strand, within IAI46_14200at 3013.518 kb on + strand, within IAI46_14200at 3013.519 kb on - strand, within IAI46_14200at 3013.563 kb on + strand, within IAI46_14200at 3013.572 kb on + strand, within IAI46_14200at 3013.745 kb on + strandat 3013.797 kb on + strandat 3013.798 kb on - strandat 3013.837 kb on - strandat 3013.837 kb on - strandat 3013.842 kb on - strandat 3013.859 kb on + strandat 3013.860 kb on - strandat 3013.917 kb on - strandat 3013.917 kb on - strandat 3013.946 kb on + strandat 3013.947 kb on - strandat 3014.073 kb on + strand, within IAI46_14205at 3014.128 kb on - strand, within IAI46_14205at 3014.138 kb on + strand, within IAI46_14205at 3014.283 kb on + strand, within IAI46_14205at 3014.574 kb on - strand, within IAI46_14205at 3014.576 kb on + strand, within IAI46_14205at 3014.577 kb on - strand, within IAI46_14205at 3014.579 kb on + strand, within IAI46_14205at 3014.579 kb on + strand, within IAI46_14205at 3014.579 kb on + strand, within IAI46_14205at 3014.580 kb on - strand, within IAI46_14205at 3014.580 kb on - strand, within IAI46_14205at 3014.583 kb on + strand, within IAI46_14205at 3014.583 kb on + strand, within IAI46_14205at 3014.584 kb on - strand, within IAI46_14205at 3014.591 kb on + strand, within IAI46_14205at 3014.591 kb on + strand, within IAI46_14205at 3014.599 kb on + strand, within IAI46_14205at 3014.661 kb on + strand, within IAI46_14205at 3014.662 kb on - strand, within IAI46_14205

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,011,918 - +1.2
3,012,073 - IAI46_14195 0.17 -0.7
3,012,136 - IAI46_14195 0.24 +0.1
3,012,152 - IAI46_14195 0.26 +0.1
3,012,309 - IAI46_14195 0.43 -0.2
3,012,519 - IAI46_14195 0.66 -0.7
3,012,577 + IAI46_14195 0.73 +0.8
3,012,634 + IAI46_14195 0.79 +0.5
3,012,690 + IAI46_14195 0.85 -0.3
3,012,840 + +0.3
3,012,841 - +0.9
3,012,945 + IAI46_14200 0.12 -0.9
3,012,946 - IAI46_14200 0.12 -0.8
3,013,101 - IAI46_14200 0.28 -0.4
3,013,204 + IAI46_14200 0.40 +0.2
3,013,207 - IAI46_14200 0.40 +0.2
3,013,517 - IAI46_14200 0.74 -0.6
3,013,518 + IAI46_14200 0.74 +0.5
3,013,519 - IAI46_14200 0.74 -0.6
3,013,563 + IAI46_14200 0.79 +1.2
3,013,572 + IAI46_14200 0.80 -0.2
3,013,745 + +0.2
3,013,797 + +1.1
3,013,798 - +0.9
3,013,837 - +0.4
3,013,837 - -0.5
3,013,842 - -1.8
3,013,859 + -1.3
3,013,860 - -0.5
3,013,917 - -0.9
3,013,917 - -0.2
3,013,946 + +0.2
3,013,947 - +0.9
3,014,073 + IAI46_14205 0.14 +0.9
3,014,128 - IAI46_14205 0.17 +0.8
3,014,138 + IAI46_14205 0.18 -0.5
3,014,283 + IAI46_14205 0.27 -0.4
3,014,574 - IAI46_14205 0.45 -0.2
3,014,576 + IAI46_14205 0.45 -1.3
3,014,577 - IAI46_14205 0.45 -1.3
3,014,579 + IAI46_14205 0.45 -1.0
3,014,579 + IAI46_14205 0.45 -0.1
3,014,579 + IAI46_14205 0.45 -0.1
3,014,580 - IAI46_14205 0.45 +1.2
3,014,580 - IAI46_14205 0.45 -0.5
3,014,583 + IAI46_14205 0.45 +0.1
3,014,583 + IAI46_14205 0.45 +1.1
3,014,584 - IAI46_14205 0.45 -1.9
3,014,591 + IAI46_14205 0.46 -0.7
3,014,591 + IAI46_14205 0.46 -0.8
3,014,599 + IAI46_14205 0.46 -0.5
3,014,661 + IAI46_14205 0.50 -0.6
3,014,662 - IAI46_14205 0.50 +0.4

Or see this region's nucleotide sequence