Strain Fitness in Serratia liquefaciens MT49 around IAI46_13300

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13290 and IAI46_13295 are separated by 126 nucleotidesIAI46_13295 and IAI46_13300 are separated by 73 nucleotidesIAI46_13300 and IAI46_13305 overlap by 4 nucleotides IAI46_13290: IAI46_13290 - hypothetical protein, at 2,835,566 to 2,835,982 _13290 IAI46_13295: IAI46_13295 - dihydromonapterin reductase, at 2,836,109 to 2,836,831 _13295 IAI46_13300: IAI46_13300 - two-component system response regulator RstA, at 2,836,905 to 2,837,630 _13300 IAI46_13305: IAI46_13305 - two-component system sensor histidine kinase RstB, at 2,837,627 to 2,838,931 _13305 Position (kb) 2836 2837 2838Strain fitness (log2 ratio) -1 0 1at 2835.922 kb on - strand, within IAI46_13290at 2835.973 kb on + strandat 2835.974 kb on - strandat 2836.005 kb on - strandat 2836.007 kb on + strandat 2836.008 kb on - strandat 2836.008 kb on - strandat 2836.008 kb on - strandat 2836.056 kb on + strandat 2836.067 kb on - strandat 2836.230 kb on - strand, within IAI46_13295at 2836.304 kb on + strand, within IAI46_13295at 2836.304 kb on + strand, within IAI46_13295at 2836.449 kb on - strand, within IAI46_13295at 2836.449 kb on - strand, within IAI46_13295at 2836.508 kb on - strand, within IAI46_13295at 2836.526 kb on + strand, within IAI46_13295at 2836.527 kb on - strand, within IAI46_13295at 2836.527 kb on - strand, within IAI46_13295at 2836.562 kb on + strand, within IAI46_13295at 2836.591 kb on + strand, within IAI46_13295at 2836.591 kb on + strand, within IAI46_13295at 2836.592 kb on - strand, within IAI46_13295at 2836.661 kb on - strand, within IAI46_13295at 2836.910 kb on + strandat 2836.979 kb on + strand, within IAI46_13300at 2837.064 kb on - strand, within IAI46_13300at 2837.481 kb on + strand, within IAI46_13300at 2837.481 kb on + strand, within IAI46_13300at 2837.538 kb on + strand, within IAI46_13300at 2837.539 kb on - strand, within IAI46_13300at 2837.582 kb on + strandat 2837.583 kb on - strandat 2837.706 kb on - strandat 2837.945 kb on + strand, within IAI46_13305at 2837.953 kb on + strand, within IAI46_13305at 2837.954 kb on - strand, within IAI46_13305at 2837.954 kb on - strand, within IAI46_13305at 2838.014 kb on + strand, within IAI46_13305at 2838.014 kb on + strand, within IAI46_13305at 2838.014 kb on + strand, within IAI46_13305at 2838.015 kb on - strand, within IAI46_13305at 2838.400 kb on + strand, within IAI46_13305at 2838.415 kb on + strand, within IAI46_13305at 2838.454 kb on + strand, within IAI46_13305at 2838.609 kb on + strand, within IAI46_13305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
2,835,922 - IAI46_13290 0.85 +0.1
2,835,973 + -1.2
2,835,974 - +1.0
2,836,005 - +1.0
2,836,007 + +1.2
2,836,008 - +0.3
2,836,008 - -0.3
2,836,008 - -1.0
2,836,056 + +1.1
2,836,067 - -0.8
2,836,230 - IAI46_13295 0.17 +0.7
2,836,304 + IAI46_13295 0.27 -0.2
2,836,304 + IAI46_13295 0.27 -0.2
2,836,449 - IAI46_13295 0.47 +0.8
2,836,449 - IAI46_13295 0.47 +0.4
2,836,508 - IAI46_13295 0.55 -0.3
2,836,526 + IAI46_13295 0.58 -0.4
2,836,527 - IAI46_13295 0.58 -1.4
2,836,527 - IAI46_13295 0.58 -1.2
2,836,562 + IAI46_13295 0.63 +0.8
2,836,591 + IAI46_13295 0.67 +0.0
2,836,591 + IAI46_13295 0.67 +0.4
2,836,592 - IAI46_13295 0.67 -0.2
2,836,661 - IAI46_13295 0.76 +0.4
2,836,910 + +0.4
2,836,979 + IAI46_13300 0.10 -0.6
2,837,064 - IAI46_13300 0.22 +0.1
2,837,481 + IAI46_13300 0.79 +1.3
2,837,481 + IAI46_13300 0.79 +0.5
2,837,538 + IAI46_13300 0.87 +0.2
2,837,539 - IAI46_13300 0.87 -0.6
2,837,582 + +0.5
2,837,583 - -0.0
2,837,706 - -0.8
2,837,945 + IAI46_13305 0.24 -0.7
2,837,953 + IAI46_13305 0.25 +0.3
2,837,954 - IAI46_13305 0.25 +0.4
2,837,954 - IAI46_13305 0.25 -0.6
2,838,014 + IAI46_13305 0.30 -0.1
2,838,014 + IAI46_13305 0.30 +0.5
2,838,014 + IAI46_13305 0.30 -0.4
2,838,015 - IAI46_13305 0.30 +1.2
2,838,400 + IAI46_13305 0.59 +0.6
2,838,415 + IAI46_13305 0.60 +1.6
2,838,454 + IAI46_13305 0.63 +0.1
2,838,609 + IAI46_13305 0.75 +0.1

Or see this region's nucleotide sequence