Strain Fitness in Serratia liquefaciens MT49 around IAI46_13215

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13210 and IAI46_13215 are separated by 19 nucleotidesIAI46_13215 and IAI46_13220 are separated by 18 nucleotides IAI46_13210: IAI46_13210 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,818,350 to 2,819,462 _13210 IAI46_13215: IAI46_13215 - Gfo/Idh/MocA family oxidoreductase, at 2,819,482 to 2,820,765 _13215 IAI46_13220: IAI46_13220 - ROK family protein, at 2,820,784 to 2,821,692 _13220 Position (kb) 2819 2820 2821Strain fitness (log2 ratio) -2 -1 0 1at 2818.602 kb on + strand, within IAI46_13210at 2818.629 kb on + strand, within IAI46_13210at 2818.929 kb on + strand, within IAI46_13210at 2818.930 kb on - strand, within IAI46_13210at 2819.001 kb on - strand, within IAI46_13210at 2819.021 kb on + strand, within IAI46_13210at 2819.121 kb on - strand, within IAI46_13210at 2819.351 kb on + strandat 2819.352 kb on - strandat 2819.460 kb on + strandat 2819.460 kb on + strandat 2819.903 kb on - strand, within IAI46_13215at 2819.903 kb on - strand, within IAI46_13215at 2819.903 kb on - strand, within IAI46_13215at 2820.223 kb on + strand, within IAI46_13215at 2820.511 kb on + strand, within IAI46_13215at 2820.512 kb on - strand, within IAI46_13215at 2820.613 kb on + strand, within IAI46_13215at 2820.748 kb on - strandat 2821.285 kb on + strand, within IAI46_13220at 2821.656 kb on - strandat 2821.671 kb on - strandat 2821.671 kb on - strandat 2821.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,818,602 + IAI46_13210 0.23 +1.4
2,818,629 + IAI46_13210 0.25 -0.6
2,818,929 + IAI46_13210 0.52 +0.1
2,818,930 - IAI46_13210 0.52 -0.1
2,819,001 - IAI46_13210 0.58 +1.3
2,819,021 + IAI46_13210 0.60 -1.0
2,819,121 - IAI46_13210 0.69 +0.6
2,819,351 + -0.2
2,819,352 - -1.3
2,819,460 + -0.9
2,819,460 + -0.5
2,819,903 - IAI46_13215 0.33 -0.2
2,819,903 - IAI46_13215 0.33 -2.7
2,819,903 - IAI46_13215 0.33 +0.6
2,820,223 + IAI46_13215 0.58 +0.3
2,820,511 + IAI46_13215 0.80 -0.4
2,820,512 - IAI46_13215 0.80 +1.7
2,820,613 + IAI46_13215 0.88 -0.0
2,820,748 - +0.2
2,821,285 + IAI46_13220 0.55 +1.2
2,821,656 - -0.5
2,821,671 - -0.5
2,821,671 - +1.0
2,821,673 + +0.3

Or see this region's nucleotide sequence