Strain Fitness in Serratia liquefaciens MT49 around IAI46_13155

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13150 and IAI46_13155 are separated by 1 nucleotidesIAI46_13155 and IAI46_13160 are separated by 68 nucleotidesIAI46_13160 and IAI46_13165 overlap by 4 nucleotides IAI46_13150: IAI46_13150 - MsnO8 family LLM class oxidoreductase, at 2,805,326 to 2,806,309 _13150 IAI46_13155: IAI46_13155 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,806,311 to 2,807,615 _13155 IAI46_13160: IAI46_13160 - hypothetical protein, at 2,807,684 to 2,807,941 _13160 IAI46_13165: IAI46_13165 - glutamine amidotransferase, at 2,807,938 to 2,808,651 _13165 Position (kb) 2806 2807 2808Strain fitness (log2 ratio) -2 -1 0 1 2at 2805.311 kb on + strandat 2805.332 kb on + strandat 2805.513 kb on - strand, within IAI46_13150at 2805.573 kb on - strand, within IAI46_13150at 2805.581 kb on + strand, within IAI46_13150at 2805.744 kb on + strand, within IAI46_13150at 2806.512 kb on - strand, within IAI46_13155at 2806.512 kb on - strand, within IAI46_13155at 2806.693 kb on + strand, within IAI46_13155at 2806.694 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.924 kb on - strand, within IAI46_13155at 2807.325 kb on - strand, within IAI46_13155at 2807.406 kb on - strand, within IAI46_13155at 2807.551 kb on - strandat 2807.633 kb on - strandat 2807.700 kb on + strandat 2807.711 kb on - strand, within IAI46_13160at 2807.711 kb on - strand, within IAI46_13160at 2807.711 kb on - strand, within IAI46_13160at 2807.821 kb on + strand, within IAI46_13160at 2807.822 kb on - strand, within IAI46_13160at 2807.847 kb on + strand, within IAI46_13160at 2807.848 kb on - strand, within IAI46_13160at 2807.891 kb on - strand, within IAI46_13160at 2808.142 kb on + strand, within IAI46_13165at 2808.165 kb on - strand, within IAI46_13165at 2808.287 kb on - strand, within IAI46_13165at 2808.369 kb on + strand, within IAI46_13165at 2808.376 kb on - strand, within IAI46_13165at 2808.415 kb on - strand, within IAI46_13165at 2808.612 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
2,805,311 + +2.2
2,805,332 + -0.2
2,805,513 - IAI46_13150 0.19 +0.2
2,805,573 - IAI46_13150 0.25 -0.7
2,805,581 + IAI46_13150 0.26 +0.3
2,805,744 + IAI46_13150 0.42 -0.2
2,806,512 - IAI46_13155 0.15 +0.9
2,806,512 - IAI46_13155 0.15 -0.5
2,806,693 + IAI46_13155 0.29 +0.4
2,806,694 - IAI46_13155 0.29 +0.6
2,806,790 - IAI46_13155 0.37 -0.0
2,806,790 - IAI46_13155 0.37 -1.8
2,806,790 - IAI46_13155 0.37 +0.0
2,806,924 - IAI46_13155 0.47 -1.2
2,807,325 - IAI46_13155 0.78 -0.2
2,807,406 - IAI46_13155 0.84 -0.6
2,807,551 - +1.3
2,807,633 - -0.2
2,807,700 + -1.2
2,807,711 - IAI46_13160 0.10 -0.2
2,807,711 - IAI46_13160 0.10 -1.2
2,807,711 - IAI46_13160 0.10 -1.0
2,807,821 + IAI46_13160 0.53 +0.0
2,807,822 - IAI46_13160 0.53 -0.3
2,807,847 + IAI46_13160 0.63 +0.1
2,807,848 - IAI46_13160 0.64 -0.5
2,807,891 - IAI46_13160 0.80 +0.3
2,808,142 + IAI46_13165 0.29 +0.6
2,808,165 - IAI46_13165 0.32 -0.3
2,808,287 - IAI46_13165 0.49 -0.2
2,808,369 + IAI46_13165 0.60 -0.0
2,808,376 - IAI46_13165 0.61 +1.1
2,808,415 - IAI46_13165 0.67 +0.1
2,808,612 - -1.3

Or see this region's nucleotide sequence