Strain Fitness in Serratia liquefaciens MT49 around IAI46_11465

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11455 and IAI46_11460 overlap by 1 nucleotidesIAI46_11460 and IAI46_11465 overlap by 4 nucleotidesIAI46_11465 and IAI46_11470 are separated by 9 nucleotides IAI46_11455: IAI46_11455 - endonuclease III, at 2,417,794 to 2,418,435 _11455 IAI46_11460: IAI46_11460 - electron transport complex subunit E, at 2,418,435 to 2,419,133 _11460 IAI46_11465: IAI46_11465 - electron transport complex subunit RsxG, at 2,419,130 to 2,419,759 _11465 IAI46_11470: IAI46_11470 - electron transport complex subunit RsxD, at 2,419,769 to 2,420,854 _11470 Position (kb) 2419 2420Strain fitness (log2 ratio) -2 -1 0 1at 2418.145 kb on + strand, within IAI46_11455at 2418.213 kb on - strand, within IAI46_11455at 2418.292 kb on - strand, within IAI46_11455at 2418.430 kb on - strandat 2418.622 kb on - strand, within IAI46_11460at 2418.712 kb on - strand, within IAI46_11460at 2418.831 kb on - strand, within IAI46_11460at 2418.850 kb on + strand, within IAI46_11460at 2418.919 kb on + strand, within IAI46_11460at 2418.919 kb on + strand, within IAI46_11460at 2418.920 kb on - strand, within IAI46_11460at 2418.920 kb on - strand, within IAI46_11460at 2418.930 kb on - strand, within IAI46_11460at 2418.930 kb on - strand, within IAI46_11460at 2419.155 kb on - strandat 2419.160 kb on - strandat 2419.160 kb on - strandat 2419.160 kb on - strandat 2419.188 kb on + strandat 2419.188 kb on + strandat 2419.189 kb on - strandat 2419.189 kb on - strandat 2419.189 kb on - strandat 2419.292 kb on - strand, within IAI46_11465at 2419.346 kb on - strand, within IAI46_11465at 2419.563 kb on - strand, within IAI46_11465at 2419.597 kb on - strand, within IAI46_11465at 2419.771 kb on - strandat 2419.915 kb on - strand, within IAI46_11470at 2419.966 kb on + strand, within IAI46_11470at 2420.068 kb on + strand, within IAI46_11470at 2420.122 kb on + strand, within IAI46_11470at 2420.123 kb on - strand, within IAI46_11470at 2420.276 kb on - strand, within IAI46_11470at 2420.596 kb on + strand, within IAI46_11470at 2420.737 kb on + strand, within IAI46_11470at 2420.738 kb on - strand, within IAI46_11470

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,418,145 + IAI46_11455 0.55 +0.9
2,418,213 - IAI46_11455 0.65 -0.2
2,418,292 - IAI46_11455 0.78 +0.1
2,418,430 - +0.5
2,418,622 - IAI46_11460 0.27 -0.8
2,418,712 - IAI46_11460 0.40 -2.4
2,418,831 - IAI46_11460 0.57 -0.3
2,418,850 + IAI46_11460 0.59 -0.7
2,418,919 + IAI46_11460 0.69 +1.3
2,418,919 + IAI46_11460 0.69 -0.5
2,418,920 - IAI46_11460 0.69 -1.3
2,418,920 - IAI46_11460 0.69 +1.0
2,418,930 - IAI46_11460 0.71 +0.8
2,418,930 - IAI46_11460 0.71 +0.5
2,419,155 - -0.3
2,419,160 - +1.1
2,419,160 - -0.3
2,419,160 - +0.1
2,419,188 + -1.6
2,419,188 + -0.3
2,419,189 - +0.8
2,419,189 - +0.7
2,419,189 - +0.5
2,419,292 - IAI46_11465 0.26 +0.6
2,419,346 - IAI46_11465 0.34 -0.0
2,419,563 - IAI46_11465 0.69 +0.8
2,419,597 - IAI46_11465 0.74 +1.1
2,419,771 - +0.9
2,419,915 - IAI46_11470 0.13 +0.9
2,419,966 + IAI46_11470 0.18 -1.0
2,420,068 + IAI46_11470 0.28 +0.8
2,420,122 + IAI46_11470 0.33 -0.9
2,420,123 - IAI46_11470 0.33 -0.8
2,420,276 - IAI46_11470 0.47 +0.7
2,420,596 + IAI46_11470 0.76 +0.5
2,420,737 + IAI46_11470 0.89 +1.6
2,420,738 - IAI46_11470 0.89 +0.5

Or see this region's nucleotide sequence