Strain Fitness in Serratia liquefaciens MT49 around IAI46_10535

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_10525 and IAI46_10530 are separated by 268 nucleotidesIAI46_10530 and IAI46_10535 are separated by 275 nucleotidesIAI46_10535 and IAI46_10540 are separated by 41 nucleotides IAI46_10525: IAI46_10525 - hydrolase, at 2,223,501 to 2,224,181 _10525 IAI46_10530: IAI46_10530 - universal stress protein, at 2,224,450 to 2,224,875 _10530 IAI46_10535: IAI46_10535 - SDR family oxidoreductase, at 2,225,151 to 2,225,906 _10535 IAI46_10540: IAI46_10540 - FAD-binding oxidoreductase, at 2,225,948 to 2,227,228 _10540 Position (kb) 2225 2226Strain fitness (log2 ratio) -2 -1 0 1at 2224.218 kb on + strandat 2224.239 kb on + strandat 2224.363 kb on + strandat 2224.378 kb on + strandat 2224.456 kb on + strandat 2224.457 kb on - strandat 2224.527 kb on - strand, within IAI46_10530at 2224.589 kb on - strand, within IAI46_10530at 2224.612 kb on + strand, within IAI46_10530at 2224.613 kb on - strand, within IAI46_10530at 2224.618 kb on + strand, within IAI46_10530at 2224.618 kb on + strand, within IAI46_10530at 2224.619 kb on - strand, within IAI46_10530at 2224.705 kb on - strand, within IAI46_10530at 2224.705 kb on - strand, within IAI46_10530at 2224.771 kb on - strand, within IAI46_10530at 2224.771 kb on - strand, within IAI46_10530at 2224.874 kb on - strandat 2224.922 kb on - strandat 2224.929 kb on - strandat 2224.944 kb on + strandat 2225.009 kb on + strandat 2225.049 kb on + strandat 2225.128 kb on + strandat 2225.129 kb on - strandat 2225.165 kb on + strandat 2225.165 kb on + strandat 2225.173 kb on + strandat 2225.249 kb on - strand, within IAI46_10535at 2225.325 kb on - strand, within IAI46_10535at 2225.325 kb on - strand, within IAI46_10535at 2225.325 kb on - strand, within IAI46_10535at 2225.437 kb on + strand, within IAI46_10535at 2225.438 kb on - strand, within IAI46_10535at 2225.438 kb on - strand, within IAI46_10535at 2225.523 kb on + strand, within IAI46_10535at 2225.524 kb on - strand, within IAI46_10535at 2225.598 kb on + strand, within IAI46_10535at 2225.598 kb on + strand, within IAI46_10535at 2225.598 kb on + strand, within IAI46_10535at 2225.602 kb on - strand, within IAI46_10535at 2225.686 kb on + strand, within IAI46_10535at 2225.686 kb on + strand, within IAI46_10535at 2225.687 kb on - strand, within IAI46_10535at 2225.687 kb on - strand, within IAI46_10535at 2225.711 kb on + strand, within IAI46_10535at 2225.711 kb on + strand, within IAI46_10535at 2225.712 kb on - strand, within IAI46_10535at 2225.760 kb on - strand, within IAI46_10535at 2225.768 kb on - strand, within IAI46_10535at 2225.929 kb on + strandat 2225.929 kb on + strandat 2225.930 kb on - strandat 2225.949 kb on + strandat 2225.949 kb on + strandat 2225.977 kb on - strandat 2225.979 kb on + strandat 2225.980 kb on - strandat 2226.118 kb on + strand, within IAI46_10540at 2226.153 kb on + strand, within IAI46_10540at 2226.153 kb on + strand, within IAI46_10540at 2226.153 kb on + strand, within IAI46_10540at 2226.153 kb on + strand, within IAI46_10540at 2226.154 kb on - strand, within IAI46_10540at 2226.156 kb on + strand, within IAI46_10540at 2226.156 kb on + strand, within IAI46_10540at 2226.214 kb on + strand, within IAI46_10540at 2226.318 kb on + strand, within IAI46_10540at 2226.319 kb on - strand, within IAI46_10540at 2226.370 kb on - strand, within IAI46_10540at 2226.381 kb on + strand, within IAI46_10540at 2226.385 kb on + strand, within IAI46_10540at 2226.386 kb on - strand, within IAI46_10540at 2226.459 kb on - strand, within IAI46_10540at 2226.543 kb on + strand, within IAI46_10540at 2226.543 kb on + strand, within IAI46_10540at 2226.544 kb on - strand, within IAI46_10540at 2226.724 kb on - strand, within IAI46_10540at 2226.782 kb on - strand, within IAI46_10540at 2226.829 kb on - strand, within IAI46_10540at 2226.889 kb on - strand, within IAI46_10540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
2,224,218 + +0.1
2,224,239 + -0.4
2,224,363 + +1.2
2,224,378 + -0.2
2,224,456 + +1.3
2,224,457 - -1.0
2,224,527 - IAI46_10530 0.18 -0.8
2,224,589 - IAI46_10530 0.33 +0.9
2,224,612 + IAI46_10530 0.38 +0.3
2,224,613 - IAI46_10530 0.38 -0.6
2,224,618 + IAI46_10530 0.39 -0.0
2,224,618 + IAI46_10530 0.39 -0.2
2,224,619 - IAI46_10530 0.40 -0.0
2,224,705 - IAI46_10530 0.60 +0.4
2,224,705 - IAI46_10530 0.60 +0.2
2,224,771 - IAI46_10530 0.75 +0.7
2,224,771 - IAI46_10530 0.75 -0.9
2,224,874 - -0.7
2,224,922 - +1.5
2,224,929 - -0.4
2,224,944 + -0.0
2,225,009 + -0.3
2,225,049 + +0.5
2,225,128 + +0.2
2,225,129 - -0.3
2,225,165 + -0.0
2,225,165 + -0.8
2,225,173 + +0.1
2,225,249 - IAI46_10535 0.13 +1.0
2,225,325 - IAI46_10535 0.23 -1.5
2,225,325 - IAI46_10535 0.23 +0.2
2,225,325 - IAI46_10535 0.23 -0.4
2,225,437 + IAI46_10535 0.38 -0.8
2,225,438 - IAI46_10535 0.38 +0.5
2,225,438 - IAI46_10535 0.38 -1.0
2,225,523 + IAI46_10535 0.49 -0.0
2,225,524 - IAI46_10535 0.49 +0.5
2,225,598 + IAI46_10535 0.59 -0.0
2,225,598 + IAI46_10535 0.59 +0.2
2,225,598 + IAI46_10535 0.59 +0.9
2,225,602 - IAI46_10535 0.60 -0.6
2,225,686 + IAI46_10535 0.71 +0.6
2,225,686 + IAI46_10535 0.71 +0.2
2,225,687 - IAI46_10535 0.71 +0.7
2,225,687 - IAI46_10535 0.71 -0.5
2,225,711 + IAI46_10535 0.74 +0.3
2,225,711 + IAI46_10535 0.74 -0.6
2,225,712 - IAI46_10535 0.74 +0.4
2,225,760 - IAI46_10535 0.81 +0.5
2,225,768 - IAI46_10535 0.82 -0.6
2,225,929 + +0.1
2,225,929 + +0.2
2,225,930 - -0.9
2,225,949 + +1.2
2,225,949 + -0.1
2,225,977 - +0.0
2,225,979 + +0.5
2,225,980 - +0.3
2,226,118 + IAI46_10540 0.13 +0.2
2,226,153 + IAI46_10540 0.16 +0.6
2,226,153 + IAI46_10540 0.16 -0.7
2,226,153 + IAI46_10540 0.16 -1.5
2,226,153 + IAI46_10540 0.16 -0.5
2,226,154 - IAI46_10540 0.16 +0.4
2,226,156 + IAI46_10540 0.16 -1.1
2,226,156 + IAI46_10540 0.16 -0.1
2,226,214 + IAI46_10540 0.21 +0.2
2,226,318 + IAI46_10540 0.29 +0.7
2,226,319 - IAI46_10540 0.29 -0.2
2,226,370 - IAI46_10540 0.33 +0.2
2,226,381 + IAI46_10540 0.34 +1.2
2,226,385 + IAI46_10540 0.34 +0.1
2,226,386 - IAI46_10540 0.34 +0.6
2,226,459 - IAI46_10540 0.40 +1.1
2,226,543 + IAI46_10540 0.46 +0.1
2,226,543 + IAI46_10540 0.46 +0.2
2,226,544 - IAI46_10540 0.47 -0.1
2,226,724 - IAI46_10540 0.61 +0.2
2,226,782 - IAI46_10540 0.65 +0.2
2,226,829 - IAI46_10540 0.69 -1.8
2,226,889 - IAI46_10540 0.73 +1.3

Or see this region's nucleotide sequence