Strain Fitness in Serratia liquefaciens MT49 around IAI46_09900

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09895 and IAI46_09900 are separated by 148 nucleotidesIAI46_09900 and IAI46_09905 are separated by 72 nucleotidesIAI46_09905 and IAI46_09910 are separated by 332 nucleotides IAI46_09895: IAI46_09895 - thiamine kinase, at 2,091,269 to 2,092,144 _09895 IAI46_09900: IAI46_09900 - beta-N-acetylhexosaminidase, at 2,092,293 to 2,093,312 _09900 IAI46_09905: IAI46_09905 - alpha/beta hydrolase, at 2,093,385 to 2,093,927 _09905 IAI46_09910: IAI46_09910 - NAD(P)/FAD-dependent oxidoreductase, at 2,094,260 to 2,095,564 _09910 Position (kb) 2092 2093 2094Strain fitness (log2 ratio) -2 -1 0 1 2at 2091.300 kb on + strandat 2091.405 kb on + strand, within IAI46_09895at 2091.405 kb on + strand, within IAI46_09895at 2091.793 kb on + strand, within IAI46_09895at 2091.793 kb on + strand, within IAI46_09895at 2091.794 kb on - strand, within IAI46_09895at 2091.857 kb on + strand, within IAI46_09895at 2091.950 kb on + strand, within IAI46_09895at 2092.022 kb on + strand, within IAI46_09895at 2092.132 kb on - strandat 2092.132 kb on - strandat 2092.138 kb on - strandat 2092.143 kb on - strandat 2092.173 kb on + strandat 2092.173 kb on + strandat 2092.189 kb on + strandat 2092.190 kb on - strandat 2092.190 kb on - strandat 2092.190 kb on - strandat 2092.193 kb on + strandat 2092.193 kb on + strandat 2092.193 kb on + strandat 2092.194 kb on - strandat 2092.194 kb on - strandat 2092.194 kb on - strandat 2092.194 kb on - strandat 2092.194 kb on - strandat 2092.194 kb on - strandat 2092.197 kb on + strandat 2092.197 kb on + strandat 2092.197 kb on + strandat 2092.197 kb on + strandat 2092.197 kb on + strandat 2092.197 kb on + strandat 2092.198 kb on - strandat 2092.198 kb on - strandat 2092.198 kb on - strandat 2092.245 kb on + strandat 2092.253 kb on + strandat 2092.255 kb on + strandat 2092.255 kb on + strandat 2092.263 kb on + strandat 2092.297 kb on + strandat 2092.860 kb on - strand, within IAI46_09900at 2092.907 kb on - strand, within IAI46_09900at 2092.926 kb on + strand, within IAI46_09900at 2092.966 kb on - strand, within IAI46_09900at 2092.973 kb on - strand, within IAI46_09900at 2093.150 kb on + strand, within IAI46_09900at 2093.188 kb on + strand, within IAI46_09900at 2093.188 kb on + strand, within IAI46_09900at 2093.188 kb on + strand, within IAI46_09900at 2093.188 kb on + strand, within IAI46_09900at 2093.189 kb on - strand, within IAI46_09900at 2093.190 kb on + strand, within IAI46_09900at 2093.191 kb on - strand, within IAI46_09900at 2093.327 kb on - strandat 2093.327 kb on - strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.391 kb on - strandat 2093.391 kb on - strandat 2093.391 kb on - strandat 2093.395 kb on - strandat 2093.395 kb on - strandat 2093.399 kb on - strandat 2093.444 kb on - strand, within IAI46_09905at 2093.484 kb on + strand, within IAI46_09905at 2093.484 kb on + strand, within IAI46_09905at 2093.484 kb on + strand, within IAI46_09905at 2093.485 kb on - strand, within IAI46_09905at 2093.612 kb on + strand, within IAI46_09905at 2093.613 kb on - strand, within IAI46_09905at 2093.675 kb on + strand, within IAI46_09905at 2093.675 kb on + strand, within IAI46_09905at 2093.675 kb on + strand, within IAI46_09905at 2093.676 kb on - strand, within IAI46_09905at 2093.706 kb on + strand, within IAI46_09905at 2093.706 kb on + strand, within IAI46_09905at 2093.832 kb on + strand, within IAI46_09905at 2093.833 kb on - strand, within IAI46_09905at 2093.835 kb on + strand, within IAI46_09905at 2093.900 kb on + strandat 2093.901 kb on - strandat 2093.901 kb on - strandat 2094.056 kb on + strandat 2094.117 kb on + strandat 2094.134 kb on + strandat 2094.134 kb on + strandat 2094.169 kb on + strandat 2094.194 kb on + strandat 2094.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,091,300 + +0.6
2,091,405 + IAI46_09895 0.16 +1.4
2,091,405 + IAI46_09895 0.16 +1.2
2,091,793 + IAI46_09895 0.60 -0.3
2,091,793 + IAI46_09895 0.60 +0.1
2,091,794 - IAI46_09895 0.60 +1.6
2,091,857 + IAI46_09895 0.67 +0.2
2,091,950 + IAI46_09895 0.78 +0.3
2,092,022 + IAI46_09895 0.86 -1.2
2,092,132 - +0.1
2,092,132 - -0.9
2,092,138 - -1.0
2,092,143 - +0.6
2,092,173 + +0.5
2,092,173 + +0.6
2,092,189 + +0.5
2,092,190 - +1.0
2,092,190 - -0.4
2,092,190 - +0.2
2,092,193 + +0.6
2,092,193 + -0.6
2,092,193 + +0.2
2,092,194 - +0.8
2,092,194 - +0.1
2,092,194 - +0.4
2,092,194 - +0.6
2,092,194 - +0.1
2,092,194 - -0.2
2,092,197 + -0.5
2,092,197 + +0.1
2,092,197 + +0.6
2,092,197 + -0.1
2,092,197 + +0.9
2,092,197 + -0.7
2,092,198 - -0.6
2,092,198 - +0.6
2,092,198 - +0.4
2,092,245 + -0.6
2,092,253 + +0.7
2,092,255 + -0.1
2,092,255 + +1.2
2,092,263 + +0.9
2,092,297 + -0.8
2,092,860 - IAI46_09900 0.56 -0.3
2,092,907 - IAI46_09900 0.60 -1.7
2,092,926 + IAI46_09900 0.62 +0.0
2,092,966 - IAI46_09900 0.66 -0.2
2,092,973 - IAI46_09900 0.67 -0.4
2,093,150 + IAI46_09900 0.84 -0.4
2,093,188 + IAI46_09900 0.88 +0.4
2,093,188 + IAI46_09900 0.88 +0.6
2,093,188 + IAI46_09900 0.88 +0.8
2,093,188 + IAI46_09900 0.88 +1.8
2,093,189 - IAI46_09900 0.88 +0.8
2,093,190 + IAI46_09900 0.88 +0.8
2,093,191 - IAI46_09900 0.88 +1.6
2,093,327 - -1.2
2,093,327 - +1.0
2,093,390 + -0.7
2,093,390 + +0.6
2,093,390 + +0.3
2,093,390 + -1.2
2,093,390 + -0.5
2,093,390 + -0.1
2,093,391 - +0.6
2,093,391 - +1.1
2,093,391 - +0.4
2,093,395 - -1.1
2,093,395 - +0.2
2,093,399 - +0.0
2,093,444 - IAI46_09905 0.11 +0.1
2,093,484 + IAI46_09905 0.18 -0.2
2,093,484 + IAI46_09905 0.18 +0.2
2,093,484 + IAI46_09905 0.18 -0.5
2,093,485 - IAI46_09905 0.18 +0.2
2,093,612 + IAI46_09905 0.42 -0.6
2,093,613 - IAI46_09905 0.42 +0.6
2,093,675 + IAI46_09905 0.53 +0.5
2,093,675 + IAI46_09905 0.53 -0.1
2,093,675 + IAI46_09905 0.53 +0.0
2,093,676 - IAI46_09905 0.54 +1.2
2,093,706 + IAI46_09905 0.59 -0.8
2,093,706 + IAI46_09905 0.59 -2.2
2,093,832 + IAI46_09905 0.82 -0.4
2,093,833 - IAI46_09905 0.83 +1.2
2,093,835 + IAI46_09905 0.83 +0.1
2,093,900 + -0.3
2,093,901 - -0.8
2,093,901 - +0.0
2,094,056 + -1.7
2,094,117 + +0.7
2,094,134 + +1.1
2,094,134 + +0.0
2,094,169 + -0.2
2,094,194 + -0.4
2,094,195 - +0.3

Or see this region's nucleotide sequence