Strain Fitness in Serratia liquefaciens MT49 around IAI46_09700

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09695 and IAI46_09700 are separated by 426 nucleotidesIAI46_09700 and IAI46_09705 overlap by 14 nucleotidesIAI46_09705 and IAI46_09710 are separated by 4 nucleotides IAI46_09695: IAI46_09695 - cytochrome b, at 2,056,204 to 2,056,758 _09695 IAI46_09700: IAI46_09700 - AI-2E family transporter, at 2,057,185 to 2,058,237 _09700 IAI46_09705: IAI46_09705 - zinc-dependent alcohol dehydrogenase family protein, at 2,058,224 to 2,059,201 _09705 IAI46_09710: IAI46_09710 - DUF2770 family protein, at 2,059,206 to 2,059,322 _09710 Position (kb) 2057 2058 2059Strain fitness (log2 ratio) -1 0 1at 2056.320 kb on - strand, within IAI46_09695at 2056.397 kb on - strand, within IAI46_09695at 2056.434 kb on - strand, within IAI46_09695at 2056.450 kb on - strand, within IAI46_09695at 2056.466 kb on + strand, within IAI46_09695at 2056.515 kb on - strand, within IAI46_09695at 2056.597 kb on - strand, within IAI46_09695at 2056.637 kb on + strand, within IAI46_09695at 2056.638 kb on - strand, within IAI46_09695at 2056.638 kb on - strand, within IAI46_09695at 2056.683 kb on - strand, within IAI46_09695at 2056.722 kb on + strandat 2056.723 kb on - strandat 2056.770 kb on - strandat 2056.794 kb on + strandat 2056.799 kb on - strandat 2056.836 kb on + strandat 2056.836 kb on + strandat 2056.837 kb on - strandat 2056.854 kb on + strandat 2056.879 kb on + strandat 2056.930 kb on - strandat 2057.090 kb on + strandat 2057.091 kb on - strandat 2057.098 kb on + strandat 2057.099 kb on - strandat 2057.132 kb on + strandat 2057.133 kb on - strandat 2057.251 kb on - strandat 2057.316 kb on + strand, within IAI46_09700at 2057.317 kb on - strand, within IAI46_09700at 2057.345 kb on + strand, within IAI46_09700at 2057.346 kb on - strand, within IAI46_09700at 2057.358 kb on + strand, within IAI46_09700at 2057.361 kb on - strand, within IAI46_09700at 2057.384 kb on + strand, within IAI46_09700at 2057.429 kb on + strand, within IAI46_09700at 2057.540 kb on + strand, within IAI46_09700at 2057.563 kb on + strand, within IAI46_09700at 2057.563 kb on + strand, within IAI46_09700at 2057.564 kb on - strand, within IAI46_09700at 2057.660 kb on + strand, within IAI46_09700at 2057.664 kb on + strand, within IAI46_09700at 2057.664 kb on + strand, within IAI46_09700at 2057.664 kb on + strand, within IAI46_09700at 2057.715 kb on + strand, within IAI46_09700at 2057.739 kb on + strand, within IAI46_09700at 2057.770 kb on + strand, within IAI46_09700at 2057.770 kb on + strand, within IAI46_09700at 2058.015 kb on + strand, within IAI46_09700at 2058.119 kb on + strand, within IAI46_09700at 2058.119 kb on + strand, within IAI46_09700at 2058.119 kb on + strand, within IAI46_09700at 2058.119 kb on + strand, within IAI46_09700at 2058.119 kb on + strand, within IAI46_09700at 2058.141 kb on + strandat 2058.141 kb on + strandat 2058.142 kb on - strandat 2058.181 kb on - strandat 2058.181 kb on - strandat 2058.290 kb on - strandat 2058.290 kb on - strandat 2058.307 kb on - strandat 2058.311 kb on - strandat 2058.457 kb on + strand, within IAI46_09705at 2058.457 kb on + strand, within IAI46_09705at 2058.458 kb on - strand, within IAI46_09705at 2058.620 kb on + strand, within IAI46_09705at 2058.621 kb on - strand, within IAI46_09705at 2058.621 kb on - strand, within IAI46_09705at 2058.632 kb on + strand, within IAI46_09705at 2058.682 kb on + strand, within IAI46_09705at 2058.809 kb on + strand, within IAI46_09705at 2058.813 kb on - strand, within IAI46_09705at 2058.833 kb on - strand, within IAI46_09705at 2058.838 kb on - strand, within IAI46_09705at 2059.024 kb on + strand, within IAI46_09705at 2059.035 kb on + strand, within IAI46_09705at 2059.035 kb on + strand, within IAI46_09705at 2059.044 kb on + strand, within IAI46_09705at 2059.044 kb on + strand, within IAI46_09705at 2059.045 kb on - strand, within IAI46_09705at 2059.081 kb on - strand, within IAI46_09705

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,056,320 - IAI46_09695 0.21 +0.2
2,056,397 - IAI46_09695 0.35 +0.3
2,056,434 - IAI46_09695 0.41 +0.2
2,056,450 - IAI46_09695 0.44 +1.1
2,056,466 + IAI46_09695 0.47 -1.0
2,056,515 - IAI46_09695 0.56 -0.2
2,056,597 - IAI46_09695 0.71 +1.0
2,056,637 + IAI46_09695 0.78 +0.6
2,056,638 - IAI46_09695 0.78 -0.2
2,056,638 - IAI46_09695 0.78 +0.6
2,056,683 - IAI46_09695 0.86 -0.7
2,056,722 + -0.0
2,056,723 - -1.0
2,056,770 - -0.1
2,056,794 + +0.8
2,056,799 - +0.3
2,056,836 + +0.4
2,056,836 + +0.2
2,056,837 - +0.1
2,056,854 + -0.6
2,056,879 + +0.3
2,056,930 - +0.4
2,057,090 + -0.2
2,057,091 - +0.1
2,057,098 + +0.7
2,057,099 - -0.2
2,057,132 + +0.0
2,057,133 - +0.3
2,057,251 - -0.4
2,057,316 + IAI46_09700 0.12 +0.5
2,057,317 - IAI46_09700 0.13 -0.7
2,057,345 + IAI46_09700 0.15 +0.1
2,057,346 - IAI46_09700 0.15 +1.1
2,057,358 + IAI46_09700 0.16 +0.5
2,057,361 - IAI46_09700 0.17 -0.6
2,057,384 + IAI46_09700 0.19 -0.5
2,057,429 + IAI46_09700 0.23 -0.4
2,057,540 + IAI46_09700 0.34 +0.4
2,057,563 + IAI46_09700 0.36 -0.3
2,057,563 + IAI46_09700 0.36 +0.4
2,057,564 - IAI46_09700 0.36 -1.2
2,057,660 + IAI46_09700 0.45 +0.0
2,057,664 + IAI46_09700 0.45 +0.3
2,057,664 + IAI46_09700 0.45 +0.1
2,057,664 + IAI46_09700 0.45 +0.9
2,057,715 + IAI46_09700 0.50 +1.0
2,057,739 + IAI46_09700 0.53 +0.3
2,057,770 + IAI46_09700 0.56 +0.9
2,057,770 + IAI46_09700 0.56 +0.4
2,058,015 + IAI46_09700 0.79 +0.4
2,058,119 + IAI46_09700 0.89 +0.9
2,058,119 + IAI46_09700 0.89 +0.4
2,058,119 + IAI46_09700 0.89 +0.6
2,058,119 + IAI46_09700 0.89 +0.4
2,058,119 + IAI46_09700 0.89 -0.2
2,058,141 + +0.3
2,058,141 + +0.6
2,058,142 - +0.0
2,058,181 - -0.6
2,058,181 - +0.7
2,058,290 - -0.4
2,058,290 - +0.2
2,058,307 - -1.4
2,058,311 - -0.2
2,058,457 + IAI46_09705 0.24 +0.8
2,058,457 + IAI46_09705 0.24 -1.1
2,058,458 - IAI46_09705 0.24 -0.7
2,058,620 + IAI46_09705 0.40 -1.0
2,058,621 - IAI46_09705 0.41 -0.6
2,058,621 - IAI46_09705 0.41 +0.7
2,058,632 + IAI46_09705 0.42 +1.0
2,058,682 + IAI46_09705 0.47 +0.7
2,058,809 + IAI46_09705 0.60 +0.5
2,058,813 - IAI46_09705 0.60 -1.2
2,058,833 - IAI46_09705 0.62 +0.3
2,058,838 - IAI46_09705 0.63 +1.1
2,059,024 + IAI46_09705 0.82 -0.3
2,059,035 + IAI46_09705 0.83 +0.5
2,059,035 + IAI46_09705 0.83 -0.4
2,059,044 + IAI46_09705 0.84 +0.8
2,059,044 + IAI46_09705 0.84 -0.4
2,059,045 - IAI46_09705 0.84 +0.6
2,059,081 - IAI46_09705 0.88 +1.2

Or see this region's nucleotide sequence