Strain Fitness in Serratia liquefaciens MT49 around IAI46_08790

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08780 and IAI46_08785 overlap by 4 nucleotidesIAI46_08785 and IAI46_08790 are separated by 11 nucleotidesIAI46_08790 and IAI46_08795 are separated by 16 nucleotides IAI46_08780: IAI46_08780 - aliphatic sulfonates ABC transporter ATP-binding protein, at 1,884,479 to 1,885,255 _08780 IAI46_08785: IAI46_08785 - aliphatic sulfonate ABC transporter permease SsuC, at 1,885,252 to 1,886,046 _08785 IAI46_08790: IAI46_08790 - FMNH2-dependent alkanesulfonate monooxygenase, at 1,886,058 to 1,887,206 _08790 IAI46_08795: IAI46_08795 - sulfonate ABC transporter substrate-binding protein, at 1,887,223 to 1,888,188 _08795 Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -2 -1 0 1 2at 1885.191 kb on + strandat 1885.418 kb on + strand, within IAI46_08785at 1885.473 kb on + strand, within IAI46_08785at 1885.473 kb on + strand, within IAI46_08785at 1885.473 kb on + strand, within IAI46_08785at 1885.566 kb on - strand, within IAI46_08785at 1885.616 kb on + strand, within IAI46_08785at 1885.620 kb on + strand, within IAI46_08785at 1885.629 kb on - strand, within IAI46_08785at 1885.629 kb on - strand, within IAI46_08785at 1885.827 kb on + strand, within IAI46_08785at 1885.935 kb on + strand, within IAI46_08785at 1885.977 kb on + strandat 1886.024 kb on - strandat 1886.046 kb on + strandat 1886.086 kb on + strandat 1886.086 kb on + strandat 1886.086 kb on + strandat 1886.087 kb on - strandat 1886.087 kb on - strandat 1886.087 kb on - strandat 1886.091 kb on - strandat 1886.091 kb on - strandat 1886.225 kb on + strand, within IAI46_08790at 1886.736 kb on + strand, within IAI46_08790at 1886.744 kb on + strand, within IAI46_08790at 1887.003 kb on - strand, within IAI46_08790at 1887.012 kb on + strand, within IAI46_08790at 1887.012 kb on + strand, within IAI46_08790at 1887.158 kb on - strandat 1887.211 kb on + strandat 1887.212 kb on - strandat 1887.259 kb on - strandat 1887.290 kb on + strandat 1887.374 kb on + strand, within IAI46_08795at 1887.515 kb on + strand, within IAI46_08795at 1887.534 kb on - strand, within IAI46_08795at 1887.612 kb on - strand, within IAI46_08795at 1887.869 kb on + strand, within IAI46_08795at 1888.200 kb on - strandat 1888.200 kb on - strandat 1888.200 kb on - strandat 1888.201 kb on + strandat 1888.201 kb on + strandat 1888.201 kb on + strandat 1888.201 kb on + strandat 1888.201 kb on + strandat 1888.201 kb on + strandat 1888.201 kb on + strandat 1888.201 kb on + strandat 1888.202 kb on - strandat 1888.202 kb on - strandat 1888.202 kb on - strandat 1888.202 kb on - strandat 1888.203 kb on + strandat 1888.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,885,191 + -0.8
1,885,418 + IAI46_08785 0.21 +1.5
1,885,473 + IAI46_08785 0.28 +1.1
1,885,473 + IAI46_08785 0.28 -0.6
1,885,473 + IAI46_08785 0.28 -1.2
1,885,566 - IAI46_08785 0.39 +1.2
1,885,616 + IAI46_08785 0.46 -0.5
1,885,620 + IAI46_08785 0.46 +0.8
1,885,629 - IAI46_08785 0.47 -0.1
1,885,629 - IAI46_08785 0.47 -0.1
1,885,827 + IAI46_08785 0.72 +0.8
1,885,935 + IAI46_08785 0.86 +0.8
1,885,977 + -0.0
1,886,024 - +1.1
1,886,046 + +0.8
1,886,086 + +0.4
1,886,086 + -2.5
1,886,086 + +1.7
1,886,087 - +0.5
1,886,087 - -0.2
1,886,087 - +0.3
1,886,091 - -0.1
1,886,091 - +0.4
1,886,225 + IAI46_08790 0.15 +0.2
1,886,736 + IAI46_08790 0.59 -0.1
1,886,744 + IAI46_08790 0.60 -1.4
1,887,003 - IAI46_08790 0.82 -0.1
1,887,012 + IAI46_08790 0.83 -1.0
1,887,012 + IAI46_08790 0.83 +0.9
1,887,158 - -0.3
1,887,211 + +0.4
1,887,212 - +2.4
1,887,259 - +0.9
1,887,290 + +0.2
1,887,374 + IAI46_08795 0.16 +0.1
1,887,515 + IAI46_08795 0.30 -2.1
1,887,534 - IAI46_08795 0.32 -0.8
1,887,612 - IAI46_08795 0.40 -1.2
1,887,869 + IAI46_08795 0.67 +0.8
1,888,200 - +0.2
1,888,200 - +1.1
1,888,200 - +1.1
1,888,201 + +1.1
1,888,201 + +1.0
1,888,201 + +0.1
1,888,201 + -0.9
1,888,201 + -0.2
1,888,201 + +1.0
1,888,201 + -2.1
1,888,201 + -0.2
1,888,202 - +0.7
1,888,202 - +0.3
1,888,202 - +1.3
1,888,202 - -0.7
1,888,203 + -0.5
1,888,204 - -0.7

Or see this region's nucleotide sequence