Strain Fitness in Serratia liquefaciens MT49 around IAI46_08205

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_08200 and IAI46_08205 overlap by 4 nucleotidesIAI46_08205 and IAI46_08210 overlap by 4 nucleotides IAI46_08200: IAI46_08200 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,745,715 to 1,746,782 _08200 IAI46_08205: IAI46_08205 - histidinol-phosphate transaminase, at 1,746,779 to 1,747,867 _08205 IAI46_08210: IAI46_08210 - histidinol dehydrogenase, at 1,747,864 to 1,749,171 _08210 Position (kb) 1746 1747 1748Strain fitness (log2 ratio) -3 -2 -1 0 1at 1745.863 kb on + strand, within IAI46_08200at 1745.864 kb on - strand, within IAI46_08200at 1745.941 kb on + strand, within IAI46_08200at 1745.942 kb on - strand, within IAI46_08200at 1746.107 kb on + strand, within IAI46_08200at 1746.108 kb on - strand, within IAI46_08200at 1746.109 kb on + strand, within IAI46_08200at 1746.109 kb on + strand, within IAI46_08200at 1746.109 kb on + strand, within IAI46_08200at 1746.109 kb on + strand, within IAI46_08200at 1746.110 kb on - strand, within IAI46_08200at 1746.407 kb on - strand, within IAI46_08200at 1746.407 kb on - strand, within IAI46_08200at 1746.762 kb on - strandat 1746.919 kb on + strand, within IAI46_08205at 1746.919 kb on + strand, within IAI46_08205at 1746.919 kb on + strand, within IAI46_08205at 1746.920 kb on - strand, within IAI46_08205at 1746.943 kb on + strand, within IAI46_08205at 1747.149 kb on + strand, within IAI46_08205at 1747.202 kb on - strand, within IAI46_08205at 1747.270 kb on - strand, within IAI46_08205at 1747.317 kb on + strand, within IAI46_08205at 1747.318 kb on - strand, within IAI46_08205at 1747.318 kb on - strand, within IAI46_08205at 1747.318 kb on - strand, within IAI46_08205at 1747.318 kb on - strand, within IAI46_08205at 1747.426 kb on - strand, within IAI46_08205at 1747.426 kb on - strand, within IAI46_08205at 1747.428 kb on - strand, within IAI46_08205at 1747.467 kb on - strand, within IAI46_08205at 1747.539 kb on + strand, within IAI46_08205at 1747.540 kb on - strand, within IAI46_08205at 1747.548 kb on + strand, within IAI46_08205at 1747.549 kb on - strand, within IAI46_08205at 1747.657 kb on + strand, within IAI46_08205at 1747.762 kb on - strandat 1748.054 kb on + strand, within IAI46_08210at 1748.055 kb on - strand, within IAI46_08210at 1748.065 kb on + strand, within IAI46_08210at 1748.066 kb on - strand, within IAI46_08210at 1748.066 kb on - strand, within IAI46_08210at 1748.125 kb on + strand, within IAI46_08210at 1748.476 kb on - strand, within IAI46_08210at 1748.593 kb on - strand, within IAI46_08210at 1748.719 kb on - strand, within IAI46_08210at 1748.719 kb on - strand, within IAI46_08210at 1748.744 kb on - strand, within IAI46_08210at 1748.744 kb on - strand, within IAI46_08210at 1748.779 kb on - strand, within IAI46_08210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
1,745,863 + IAI46_08200 0.14 +1.1
1,745,864 - IAI46_08200 0.14 +0.1
1,745,941 + IAI46_08200 0.21 -0.3
1,745,942 - IAI46_08200 0.21 -0.9
1,746,107 + IAI46_08200 0.37 -0.9
1,746,108 - IAI46_08200 0.37 -1.7
1,746,109 + IAI46_08200 0.37 -0.3
1,746,109 + IAI46_08200 0.37 -0.8
1,746,109 + IAI46_08200 0.37 -1.1
1,746,109 + IAI46_08200 0.37 +0.1
1,746,110 - IAI46_08200 0.37 -0.1
1,746,407 - IAI46_08200 0.65 -1.0
1,746,407 - IAI46_08200 0.65 +0.0
1,746,762 - -1.2
1,746,919 + IAI46_08205 0.13 -0.1
1,746,919 + IAI46_08205 0.13 -0.3
1,746,919 + IAI46_08205 0.13 -0.7
1,746,920 - IAI46_08205 0.13 -0.1
1,746,943 + IAI46_08205 0.15 -1.5
1,747,149 + IAI46_08205 0.34 -3.1
1,747,202 - IAI46_08205 0.39 +0.9
1,747,270 - IAI46_08205 0.45 -0.6
1,747,317 + IAI46_08205 0.49 -1.1
1,747,318 - IAI46_08205 0.49 -0.3
1,747,318 - IAI46_08205 0.49 +0.2
1,747,318 - IAI46_08205 0.49 -0.6
1,747,318 - IAI46_08205 0.49 -0.8
1,747,426 - IAI46_08205 0.59 -1.1
1,747,426 - IAI46_08205 0.59 -1.4
1,747,428 - IAI46_08205 0.60 -1.1
1,747,467 - IAI46_08205 0.63 -0.8
1,747,539 + IAI46_08205 0.70 -0.4
1,747,540 - IAI46_08205 0.70 +0.1
1,747,548 + IAI46_08205 0.71 +0.1
1,747,549 - IAI46_08205 0.71 -2.8
1,747,657 + IAI46_08205 0.81 -0.6
1,747,762 - -0.5
1,748,054 + IAI46_08210 0.15 -0.4
1,748,055 - IAI46_08210 0.15 +1.1
1,748,065 + IAI46_08210 0.15 -2.5
1,748,066 - IAI46_08210 0.15 -0.7
1,748,066 - IAI46_08210 0.15 -0.7
1,748,125 + IAI46_08210 0.20 +0.4
1,748,476 - IAI46_08210 0.47 -0.5
1,748,593 - IAI46_08210 0.56 -0.3
1,748,719 - IAI46_08210 0.65 -0.2
1,748,719 - IAI46_08210 0.65 -0.7
1,748,744 - IAI46_08210 0.67 -0.1
1,748,744 - IAI46_08210 0.67 -0.3
1,748,779 - IAI46_08210 0.70 +0.5

Or see this region's nucleotide sequence