Strain Fitness in Serratia liquefaciens MT49 around IAI46_06670

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06665 and IAI46_06670 are separated by 83 nucleotidesIAI46_06670 and IAI46_06675 are separated by 53 nucleotides IAI46_06665: IAI46_06665 - type 1 fimbrial protein, at 1,419,187 to 1,419,711 _06665 IAI46_06670: IAI46_06670 - type 1 fimbrial protein, at 1,419,795 to 1,420,340 _06670 IAI46_06675: IAI46_06675 - outer membrane usher protein, at 1,420,394 to 1,422,940 _06675 Position (kb) 1419 1420 1421Strain fitness (log2 ratio) -1 0 1 2at 1419.168 kb on + strandat 1419.170 kb on + strandat 1419.180 kb on + strandat 1419.234 kb on + strandat 1419.235 kb on - strandat 1419.291 kb on + strand, within IAI46_06665at 1419.292 kb on - strand, within IAI46_06665at 1419.292 kb on - strand, within IAI46_06665at 1419.355 kb on - strand, within IAI46_06665at 1419.402 kb on + strand, within IAI46_06665at 1419.432 kb on - strand, within IAI46_06665at 1419.501 kb on + strand, within IAI46_06665at 1419.693 kb on + strandat 1419.693 kb on + strandat 1419.709 kb on + strandat 1419.737 kb on + strandat 1419.737 kb on + strandat 1419.738 kb on - strandat 1419.768 kb on + strandat 1419.769 kb on - strandat 1419.769 kb on - strandat 1419.779 kb on + strandat 1419.779 kb on + strandat 1419.820 kb on + strandat 1419.821 kb on - strandat 1419.821 kb on - strandat 1419.839 kb on - strandat 1419.839 kb on - strandat 1419.843 kb on - strandat 1419.854 kb on - strand, within IAI46_06670at 1419.898 kb on + strand, within IAI46_06670at 1419.966 kb on - strand, within IAI46_06670at 1420.028 kb on + strand, within IAI46_06670at 1420.032 kb on - strand, within IAI46_06670at 1420.054 kb on + strand, within IAI46_06670at 1420.056 kb on - strand, within IAI46_06670at 1420.159 kb on + strand, within IAI46_06670at 1420.160 kb on - strand, within IAI46_06670at 1420.303 kb on - strandat 1420.306 kb on - strandat 1420.375 kb on + strandat 1420.524 kb on + strandat 1420.525 kb on - strandat 1420.599 kb on - strandat 1420.615 kb on + strandat 1420.616 kb on - strandat 1420.616 kb on - strandat 1420.655 kb on + strand, within IAI46_06675at 1420.693 kb on + strand, within IAI46_06675at 1420.693 kb on + strand, within IAI46_06675at 1420.835 kb on + strand, within IAI46_06675at 1420.844 kb on - strand, within IAI46_06675at 1420.844 kb on - strand, within IAI46_06675at 1420.856 kb on + strand, within IAI46_06675at 1420.857 kb on - strand, within IAI46_06675at 1420.866 kb on - strand, within IAI46_06675at 1420.866 kb on - strand, within IAI46_06675at 1420.866 kb on - strand, within IAI46_06675at 1420.867 kb on + strand, within IAI46_06675at 1420.982 kb on + strand, within IAI46_06675at 1420.983 kb on - strand, within IAI46_06675at 1420.983 kb on - strand, within IAI46_06675at 1420.983 kb on - strand, within IAI46_06675at 1420.983 kb on - strand, within IAI46_06675at 1420.983 kb on - strand, within IAI46_06675at 1420.983 kb on - strand, within IAI46_06675at 1420.984 kb on + strand, within IAI46_06675at 1421.115 kb on - strand, within IAI46_06675at 1421.117 kb on + strand, within IAI46_06675at 1421.171 kb on + strand, within IAI46_06675at 1421.176 kb on - strand, within IAI46_06675at 1421.334 kb on - strand, within IAI46_06675at 1421.334 kb on - strand, within IAI46_06675

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,419,168 + -0.2
1,419,170 + +0.4
1,419,180 + +0.3
1,419,234 + +0.2
1,419,235 - -0.2
1,419,291 + IAI46_06665 0.20 -0.5
1,419,292 - IAI46_06665 0.20 -0.3
1,419,292 - IAI46_06665 0.20 +0.4
1,419,355 - IAI46_06665 0.32 +0.2
1,419,402 + IAI46_06665 0.41 +1.2
1,419,432 - IAI46_06665 0.47 +0.0
1,419,501 + IAI46_06665 0.60 -0.1
1,419,693 + +0.1
1,419,693 + +0.2
1,419,709 + +0.4
1,419,737 + -0.1
1,419,737 + -0.4
1,419,738 - +0.6
1,419,768 + +0.4
1,419,769 - -0.2
1,419,769 - +0.5
1,419,779 + +0.8
1,419,779 + +0.3
1,419,820 + +0.7
1,419,821 - +1.3
1,419,821 - +0.4
1,419,839 - +0.2
1,419,839 - -0.6
1,419,843 - +0.1
1,419,854 - IAI46_06670 0.11 -0.7
1,419,898 + IAI46_06670 0.19 -0.7
1,419,966 - IAI46_06670 0.31 +0.1
1,420,028 + IAI46_06670 0.43 -1.6
1,420,032 - IAI46_06670 0.43 -0.8
1,420,054 + IAI46_06670 0.47 -1.4
1,420,056 - IAI46_06670 0.48 +1.0
1,420,159 + IAI46_06670 0.67 -0.5
1,420,160 - IAI46_06670 0.67 -0.6
1,420,303 - -0.1
1,420,306 - +0.9
1,420,375 + +1.3
1,420,524 + -0.5
1,420,525 - -0.3
1,420,599 - -0.1
1,420,615 + +0.4
1,420,616 - -0.3
1,420,616 - +0.5
1,420,655 + IAI46_06675 0.10 +0.5
1,420,693 + IAI46_06675 0.12 +0.8
1,420,693 + IAI46_06675 0.12 -1.4
1,420,835 + IAI46_06675 0.17 -0.3
1,420,844 - IAI46_06675 0.18 +1.1
1,420,844 - IAI46_06675 0.18 +0.4
1,420,856 + IAI46_06675 0.18 +0.9
1,420,857 - IAI46_06675 0.18 +0.3
1,420,866 - IAI46_06675 0.19 -0.6
1,420,866 - IAI46_06675 0.19 -0.9
1,420,866 - IAI46_06675 0.19 +1.2
1,420,867 + IAI46_06675 0.19 -0.2
1,420,982 + IAI46_06675 0.23 -0.7
1,420,983 - IAI46_06675 0.23 -0.3
1,420,983 - IAI46_06675 0.23 -0.4
1,420,983 - IAI46_06675 0.23 -1.3
1,420,983 - IAI46_06675 0.23 +1.8
1,420,983 - IAI46_06675 0.23 +0.1
1,420,983 - IAI46_06675 0.23 +0.7
1,420,984 + IAI46_06675 0.23 +0.4
1,421,115 - IAI46_06675 0.28 -1.0
1,421,117 + IAI46_06675 0.28 +0.0
1,421,171 + IAI46_06675 0.31 +0.2
1,421,176 - IAI46_06675 0.31 -0.1
1,421,334 - IAI46_06675 0.37 +0.2
1,421,334 - IAI46_06675 0.37 +0.6

Or see this region's nucleotide sequence