Strain Fitness in Serratia liquefaciens MT49 around IAI46_06475

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06470 and IAI46_06475 overlap by 4 nucleotidesIAI46_06475 and IAI46_06480 are separated by 169 nucleotidesIAI46_06480 and IAI46_06485 are separated by 290 nucleotides IAI46_06470: IAI46_06470 - iron ABC transporter permease, at 1,380,803 to 1,381,837 _06470 IAI46_06475: IAI46_06475 - ABC transporter ATP-binding protein, at 1,381,834 to 1,382,619 _06475 IAI46_06480: IAI46_06480 - multidrug efflux pump-associated protein, AcrZ family, at 1,382,789 to 1,382,938 _06480 IAI46_06485: IAI46_06485 - molybdate ABC transporter substrate-binding protein, at 1,383,229 to 1,384,002 _06485 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1380.900 kb on - strandat 1380.900 kb on - strandat 1380.900 kb on - strandat 1381.207 kb on + strand, within IAI46_06470at 1381.207 kb on + strand, within IAI46_06470at 1381.559 kb on + strand, within IAI46_06470at 1381.567 kb on + strand, within IAI46_06470at 1381.567 kb on + strand, within IAI46_06470at 1381.567 kb on + strand, within IAI46_06470at 1381.567 kb on + strand, within IAI46_06470at 1381.567 kb on + strand, within IAI46_06470at 1381.568 kb on - strand, within IAI46_06470at 1381.588 kb on + strand, within IAI46_06470at 1381.618 kb on + strand, within IAI46_06470at 1381.912 kb on - strandat 1381.945 kb on - strand, within IAI46_06475at 1381.945 kb on - strand, within IAI46_06475at 1381.995 kb on - strand, within IAI46_06475at 1382.165 kb on - strand, within IAI46_06475at 1382.195 kb on + strand, within IAI46_06475at 1382.200 kb on + strand, within IAI46_06475at 1382.337 kb on - strand, within IAI46_06475at 1382.337 kb on - strand, within IAI46_06475at 1382.417 kb on + strand, within IAI46_06475at 1382.456 kb on - strand, within IAI46_06475at 1382.478 kb on - strand, within IAI46_06475at 1382.537 kb on + strand, within IAI46_06475at 1382.602 kb on + strandat 1382.602 kb on + strandat 1382.603 kb on - strandat 1382.603 kb on - strandat 1382.603 kb on - strandat 1382.603 kb on - strandat 1382.603 kb on - strandat 1382.603 kb on - strandat 1382.712 kb on - strandat 1382.740 kb on + strandat 1382.740 kb on + strandat 1382.775 kb on + strandat 1382.776 kb on - strandat 1382.776 kb on - strandat 1382.776 kb on - strandat 1382.776 kb on - strandat 1382.785 kb on + strandat 1382.785 kb on + strandat 1382.943 kb on + strandat 1382.985 kb on + strandat 1382.985 kb on + strandat 1382.986 kb on - strandat 1382.986 kb on - strandat 1382.986 kb on - strandat 1382.989 kb on + strandat 1382.989 kb on + strandat 1382.989 kb on + strandat 1382.989 kb on + strandat 1382.989 kb on + strandat 1382.989 kb on + strandat 1382.990 kb on - strandat 1382.990 kb on - strandat 1382.990 kb on - strandat 1382.990 kb on - strandat 1382.990 kb on - strandat 1382.990 kb on - strandat 1382.991 kb on + strandat 1382.991 kb on + strandat 1382.991 kb on + strandat 1382.991 kb on + strandat 1382.991 kb on + strandat 1382.992 kb on - strandat 1382.992 kb on - strandat 1382.992 kb on - strandat 1382.992 kb on - strandat 1382.992 kb on - strandat 1382.999 kb on - strandat 1383.003 kb on - strandat 1383.018 kb on + strandat 1383.019 kb on - strandat 1383.049 kb on + strandat 1383.049 kb on + strandat 1383.057 kb on + strandat 1383.058 kb on - strandat 1383.105 kb on + strandat 1383.105 kb on + strandat 1383.106 kb on - strandat 1383.106 kb on - strandat 1383.115 kb on - strandat 1383.116 kb on + strandat 1383.117 kb on - strandat 1383.124 kb on + strandat 1383.125 kb on - strandat 1383.125 kb on - strandat 1383.189 kb on - strandat 1383.201 kb on + strandat 1383.201 kb on + strandat 1383.201 kb on + strandat 1383.201 kb on + strandat 1383.212 kb on - strandat 1383.246 kb on + strandat 1383.246 kb on + strandat 1383.246 kb on + strandat 1383.246 kb on + strandat 1383.247 kb on - strandat 1383.266 kb on + strandat 1383.266 kb on + strandat 1383.285 kb on + strandat 1383.285 kb on + strandat 1383.306 kb on + strandat 1383.462 kb on + strand, within IAI46_06485at 1383.463 kb on - strand, within IAI46_06485at 1383.463 kb on - strand, within IAI46_06485at 1383.463 kb on - strand, within IAI46_06485at 1383.531 kb on + strand, within IAI46_06485at 1383.531 kb on + strand, within IAI46_06485at 1383.531 kb on + strand, within IAI46_06485

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,380,900 - +1.3
1,380,900 - -0.7
1,380,900 - +0.5
1,381,207 + IAI46_06470 0.39 +0.1
1,381,207 + IAI46_06470 0.39 +0.6
1,381,559 + IAI46_06470 0.73 +1.5
1,381,567 + IAI46_06470 0.74 +0.6
1,381,567 + IAI46_06470 0.74 -0.1
1,381,567 + IAI46_06470 0.74 -0.1
1,381,567 + IAI46_06470 0.74 -1.0
1,381,567 + IAI46_06470 0.74 -0.1
1,381,568 - IAI46_06470 0.74 +0.6
1,381,588 + IAI46_06470 0.76 -0.5
1,381,618 + IAI46_06470 0.79 -0.2
1,381,912 - +0.7
1,381,945 - IAI46_06475 0.14 -0.5
1,381,945 - IAI46_06475 0.14 -1.1
1,381,995 - IAI46_06475 0.20 +0.4
1,382,165 - IAI46_06475 0.42 +0.2
1,382,195 + IAI46_06475 0.46 +0.1
1,382,200 + IAI46_06475 0.47 -0.2
1,382,337 - IAI46_06475 0.64 +0.9
1,382,337 - IAI46_06475 0.64 +0.4
1,382,417 + IAI46_06475 0.74 +0.7
1,382,456 - IAI46_06475 0.79 +0.5
1,382,478 - IAI46_06475 0.82 -0.1
1,382,537 + IAI46_06475 0.89 -0.4
1,382,602 + +0.2
1,382,602 + -0.2
1,382,603 - -0.5
1,382,603 - +0.5
1,382,603 - -0.5
1,382,603 - +0.6
1,382,603 - -0.4
1,382,603 - +0.4
1,382,712 - -0.9
1,382,740 + -1.2
1,382,740 + -0.2
1,382,775 + +0.9
1,382,776 - +1.0
1,382,776 - +0.1
1,382,776 - -1.1
1,382,776 - +1.6
1,382,785 + +0.7
1,382,785 + +0.1
1,382,943 + +0.8
1,382,985 + -0.6
1,382,985 + +0.9
1,382,986 - -0.6
1,382,986 - +0.6
1,382,986 - +0.1
1,382,989 + +1.3
1,382,989 + +0.1
1,382,989 + -0.5
1,382,989 + -1.3
1,382,989 + -1.2
1,382,989 + +0.1
1,382,990 - -0.5
1,382,990 - +0.6
1,382,990 - +2.8
1,382,990 - +0.3
1,382,990 - +0.1
1,382,990 - -1.3
1,382,991 + -0.4
1,382,991 + -0.3
1,382,991 + +0.2
1,382,991 + -0.6
1,382,991 + -0.2
1,382,992 - -0.8
1,382,992 - -2.1
1,382,992 - +0.2
1,382,992 - -0.8
1,382,992 - -0.2
1,382,999 - -1.2
1,383,003 - -0.1
1,383,018 + -0.2
1,383,019 - -0.6
1,383,049 + +0.6
1,383,049 + +0.1
1,383,057 + -0.2
1,383,058 - +0.2
1,383,105 + -0.2
1,383,105 + +1.0
1,383,106 - +0.2
1,383,106 - -0.0
1,383,115 - +2.5
1,383,116 + +0.4
1,383,117 - -0.2
1,383,124 + -0.5
1,383,125 - -0.0
1,383,125 - -0.0
1,383,189 - +0.1
1,383,201 + +1.4
1,383,201 + -1.8
1,383,201 + -0.3
1,383,201 + -0.3
1,383,212 - +0.3
1,383,246 + -0.1
1,383,246 + +0.4
1,383,246 + -0.2
1,383,246 + +0.1
1,383,247 - +0.1
1,383,266 + +0.6
1,383,266 + -0.8
1,383,285 + -0.5
1,383,285 + -0.5
1,383,306 + +0.7
1,383,462 + IAI46_06485 0.30 -0.8
1,383,463 - IAI46_06485 0.30 -0.2
1,383,463 - IAI46_06485 0.30 -0.6
1,383,463 - IAI46_06485 0.30 +0.7
1,383,531 + IAI46_06485 0.39 -1.3
1,383,531 + IAI46_06485 0.39 +0.2
1,383,531 + IAI46_06485 0.39 +0.2

Or see this region's nucleotide sequence