Strain Fitness in Serratia liquefaciens MT49 around IAI46_06260

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06255 and IAI46_06260 overlap by 7 nucleotidesIAI46_06260 and IAI46_06265 are separated by 1 nucleotides IAI46_06255: IAI46_06255 - succinate dehydrogenase cytochrome b556 subunit, at 1,338,854 to 1,339,243 _06255 IAI46_06260: IAI46_06260 - succinate dehydrogenase membrane anchor subunit, at 1,339,237 to 1,339,584 _06260 IAI46_06265: IAI46_06265 - succinate dehydrogenase flavoprotein subunit, at 1,339,586 to 1,341,352 _06265 Position (kb) 1339 1340Strain fitness (log2 ratio) -2 -1 0 1 2at 1338.316 kb on - strandat 1338.323 kb on + strandat 1338.329 kb on + strandat 1338.330 kb on - strandat 1338.333 kb on + strandat 1338.334 kb on - strandat 1338.361 kb on - strandat 1338.379 kb on - strandat 1338.381 kb on - strandat 1338.388 kb on - strandat 1338.474 kb on - strandat 1338.496 kb on + strandat 1338.496 kb on + strandat 1338.508 kb on + strandat 1338.508 kb on + strandat 1338.509 kb on - strandat 1338.509 kb on - strandat 1338.509 kb on - strandat 1338.509 kb on - strandat 1338.510 kb on + strandat 1338.520 kb on + strandat 1338.520 kb on + strandat 1338.521 kb on - strandat 1338.521 kb on - strandat 1338.521 kb on - strandat 1338.541 kb on - strandat 1338.545 kb on - strandat 1338.636 kb on - strandat 1338.649 kb on + strandat 1338.650 kb on - strandat 1338.682 kb on + strandat 1338.731 kb on - strandat 1338.841 kb on + strandat 1338.939 kb on + strand, within IAI46_06255at 1338.961 kb on + strand, within IAI46_06255at 1339.051 kb on + strand, within IAI46_06255at 1339.052 kb on - strand, within IAI46_06255at 1339.161 kb on + strand, within IAI46_06255at 1339.161 kb on + strand, within IAI46_06255at 1339.242 kb on - strandat 1339.242 kb on - strandat 1339.259 kb on - strandat 1339.274 kb on + strand, within IAI46_06260at 1339.321 kb on + strand, within IAI46_06260at 1339.321 kb on + strand, within IAI46_06260at 1339.321 kb on + strand, within IAI46_06260at 1339.322 kb on - strand, within IAI46_06260at 1339.322 kb on - strand, within IAI46_06260at 1339.330 kb on + strand, within IAI46_06260at 1339.331 kb on - strand, within IAI46_06260at 1339.331 kb on - strand, within IAI46_06260at 1339.401 kb on + strand, within IAI46_06260at 1339.472 kb on + strand, within IAI46_06260at 1339.473 kb on - strand, within IAI46_06260at 1339.483 kb on + strand, within IAI46_06260at 1339.484 kb on - strand, within IAI46_06260at 1339.502 kb on + strand, within IAI46_06260at 1339.546 kb on + strand, within IAI46_06260at 1339.550 kb on + strandat 1339.568 kb on + strandat 1339.568 kb on + strandat 1339.568 kb on + strandat 1339.569 kb on - strandat 1339.617 kb on + strandat 1339.617 kb on + strandat 1339.617 kb on + strandat 1339.617 kb on + strandat 1339.617 kb on + strandat 1339.617 kb on + strandat 1339.618 kb on - strandat 1339.789 kb on + strand, within IAI46_06265at 1339.790 kb on - strand, within IAI46_06265at 1339.790 kb on - strand, within IAI46_06265at 1339.793 kb on + strand, within IAI46_06265at 1339.793 kb on + strand, within IAI46_06265at 1339.793 kb on + strand, within IAI46_06265at 1339.794 kb on - strand, within IAI46_06265at 1339.794 kb on - strand, within IAI46_06265at 1339.794 kb on - strand, within IAI46_06265at 1339.794 kb on - strand, within IAI46_06265at 1339.844 kb on + strand, within IAI46_06265at 1339.845 kb on - strand, within IAI46_06265at 1339.845 kb on - strand, within IAI46_06265at 1339.845 kb on - strand, within IAI46_06265at 1339.847 kb on - strand, within IAI46_06265at 1339.847 kb on - strand, within IAI46_06265at 1339.847 kb on - strand, within IAI46_06265at 1339.888 kb on + strand, within IAI46_06265at 1340.033 kb on + strand, within IAI46_06265at 1340.059 kb on + strand, within IAI46_06265at 1340.060 kb on - strand, within IAI46_06265at 1340.060 kb on - strand, within IAI46_06265at 1340.060 kb on - strand, within IAI46_06265at 1340.062 kb on + strand, within IAI46_06265at 1340.062 kb on + strand, within IAI46_06265at 1340.063 kb on - strand, within IAI46_06265at 1340.132 kb on - strand, within IAI46_06265at 1340.211 kb on - strand, within IAI46_06265at 1340.234 kb on - strand, within IAI46_06265at 1340.461 kb on + strand, within IAI46_06265at 1340.462 kb on - strand, within IAI46_06265

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,338,316 - +0.4
1,338,323 + -1.5
1,338,329 + -0.5
1,338,330 - -0.0
1,338,333 + -0.6
1,338,334 - +0.6
1,338,361 - -1.5
1,338,379 - +0.4
1,338,381 - +0.6
1,338,388 - +1.3
1,338,474 - -0.1
1,338,496 + -1.1
1,338,496 + +0.3
1,338,508 + +0.5
1,338,508 + -0.5
1,338,509 - -0.1
1,338,509 - +0.7
1,338,509 - -0.7
1,338,509 - -0.1
1,338,510 + +0.4
1,338,520 + +0.6
1,338,520 + -0.4
1,338,521 - +1.1
1,338,521 - -0.1
1,338,521 - +0.3
1,338,541 - +0.3
1,338,545 - -0.3
1,338,636 - +0.1
1,338,649 + -0.3
1,338,650 - -0.2
1,338,682 + -0.7
1,338,731 - +0.6
1,338,841 + -1.1
1,338,939 + IAI46_06255 0.22 -0.2
1,338,961 + IAI46_06255 0.27 +0.3
1,339,051 + IAI46_06255 0.51 +1.1
1,339,052 - IAI46_06255 0.51 +1.5
1,339,161 + IAI46_06255 0.79 +0.9
1,339,161 + IAI46_06255 0.79 -0.3
1,339,242 - -0.3
1,339,242 - -1.1
1,339,259 - +0.3
1,339,274 + IAI46_06260 0.11 -1.1
1,339,321 + IAI46_06260 0.24 +0.1
1,339,321 + IAI46_06260 0.24 +1.1
1,339,321 + IAI46_06260 0.24 +0.5
1,339,322 - IAI46_06260 0.24 -1.3
1,339,322 - IAI46_06260 0.24 +0.5
1,339,330 + IAI46_06260 0.27 -0.8
1,339,331 - IAI46_06260 0.27 -0.0
1,339,331 - IAI46_06260 0.27 +1.3
1,339,401 + IAI46_06260 0.47 +0.5
1,339,472 + IAI46_06260 0.68 +0.3
1,339,473 - IAI46_06260 0.68 -0.7
1,339,483 + IAI46_06260 0.71 +0.3
1,339,484 - IAI46_06260 0.71 +0.4
1,339,502 + IAI46_06260 0.76 -1.5
1,339,546 + IAI46_06260 0.89 -0.7
1,339,550 + +0.7
1,339,568 + -0.5
1,339,568 + +2.1
1,339,568 + -0.8
1,339,569 - +0.4
1,339,617 + +0.1
1,339,617 + +1.1
1,339,617 + +0.3
1,339,617 + -0.9
1,339,617 + -0.3
1,339,617 + +0.5
1,339,618 - +1.3
1,339,789 + IAI46_06265 0.11 -2.0
1,339,790 - IAI46_06265 0.12 -0.3
1,339,790 - IAI46_06265 0.12 -0.3
1,339,793 + IAI46_06265 0.12 -0.0
1,339,793 + IAI46_06265 0.12 +0.2
1,339,793 + IAI46_06265 0.12 -0.5
1,339,794 - IAI46_06265 0.12 +1.2
1,339,794 - IAI46_06265 0.12 -0.3
1,339,794 - IAI46_06265 0.12 -0.3
1,339,794 - IAI46_06265 0.12 -1.0
1,339,844 + IAI46_06265 0.15 +0.9
1,339,845 - IAI46_06265 0.15 -1.6
1,339,845 - IAI46_06265 0.15 +0.8
1,339,845 - IAI46_06265 0.15 +0.9
1,339,847 - IAI46_06265 0.15 +0.2
1,339,847 - IAI46_06265 0.15 -1.3
1,339,847 - IAI46_06265 0.15 +0.0
1,339,888 + IAI46_06265 0.17 +0.5
1,340,033 + IAI46_06265 0.25 +0.9
1,340,059 + IAI46_06265 0.27 -0.6
1,340,060 - IAI46_06265 0.27 +1.7
1,340,060 - IAI46_06265 0.27 +0.8
1,340,060 - IAI46_06265 0.27 -0.1
1,340,062 + IAI46_06265 0.27 +0.9
1,340,062 + IAI46_06265 0.27 +0.1
1,340,063 - IAI46_06265 0.27 -1.4
1,340,132 - IAI46_06265 0.31 +0.2
1,340,211 - IAI46_06265 0.35 +0.6
1,340,234 - IAI46_06265 0.37 +0.6
1,340,461 + IAI46_06265 0.50 -0.3
1,340,462 - IAI46_06265 0.50 +0.5

Or see this region's nucleotide sequence