Strain Fitness in Serratia liquefaciens MT49 around IAI46_05565

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05560 and IAI46_05565 are separated by 10 nucleotidesIAI46_05565 and IAI46_05570 overlap by 1 nucleotidesIAI46_05570 and IAI46_05575 are separated by 11 nucleotides IAI46_05560: IAI46_05560 - type VI secretion system tip protein VgrG, at 1,196,252 to 1,198,279 _05560 IAI46_05565: IAI46_05565 - hypothetical protein, at 1,198,290 to 1,198,808 _05565 IAI46_05570: IAI46_05570 - PAAR domain-containing protein, at 1,198,808 to 1,199,107 _05570 IAI46_05575: IAI46_05575 - type VI secretion system protein TssA, at 1,199,119 to 1,200,159 _05575 Position (kb) 1198 1199Strain fitness (log2 ratio) -2 -1 0 1 2at 1197.373 kb on + strand, within IAI46_05560at 1197.514 kb on + strand, within IAI46_05560at 1197.555 kb on + strand, within IAI46_05560at 1197.555 kb on + strand, within IAI46_05560at 1197.555 kb on + strand, within IAI46_05560at 1197.556 kb on - strand, within IAI46_05560at 1197.556 kb on - strand, within IAI46_05560at 1197.556 kb on - strand, within IAI46_05560at 1197.557 kb on + strand, within IAI46_05560at 1197.557 kb on + strand, within IAI46_05560at 1197.558 kb on - strand, within IAI46_05560at 1197.558 kb on - strand, within IAI46_05560at 1197.558 kb on - strand, within IAI46_05560at 1197.560 kb on - strand, within IAI46_05560at 1197.560 kb on - strand, within IAI46_05560at 1197.560 kb on - strand, within IAI46_05560at 1197.640 kb on + strand, within IAI46_05560at 1197.640 kb on + strand, within IAI46_05560at 1197.641 kb on - strand, within IAI46_05560at 1197.701 kb on - strand, within IAI46_05560at 1197.703 kb on + strand, within IAI46_05560at 1197.704 kb on - strand, within IAI46_05560at 1197.756 kb on + strand, within IAI46_05560at 1197.756 kb on + strand, within IAI46_05560at 1197.757 kb on - strand, within IAI46_05560at 1197.757 kb on - strand, within IAI46_05560at 1197.757 kb on - strand, within IAI46_05560at 1197.779 kb on - strand, within IAI46_05560at 1197.800 kb on - strand, within IAI46_05560at 1197.800 kb on - strand, within IAI46_05560at 1197.868 kb on + strand, within IAI46_05560at 1197.868 kb on + strand, within IAI46_05560at 1197.868 kb on + strand, within IAI46_05560at 1197.868 kb on + strand, within IAI46_05560at 1197.869 kb on - strand, within IAI46_05560at 1197.869 kb on - strand, within IAI46_05560at 1197.901 kb on + strand, within IAI46_05560at 1197.901 kb on + strand, within IAI46_05560at 1197.901 kb on + strand, within IAI46_05560at 1197.902 kb on - strand, within IAI46_05560at 1197.902 kb on - strand, within IAI46_05560at 1197.902 kb on - strand, within IAI46_05560at 1197.926 kb on + strand, within IAI46_05560at 1197.926 kb on + strand, within IAI46_05560at 1197.926 kb on + strand, within IAI46_05560at 1197.934 kb on + strand, within IAI46_05560at 1197.935 kb on - strand, within IAI46_05560at 1197.954 kb on + strand, within IAI46_05560at 1197.959 kb on - strand, within IAI46_05560at 1197.980 kb on + strand, within IAI46_05560at 1197.980 kb on + strand, within IAI46_05560at 1197.980 kb on + strand, within IAI46_05560at 1197.981 kb on - strand, within IAI46_05560at 1197.985 kb on + strand, within IAI46_05560at 1197.985 kb on + strand, within IAI46_05560at 1197.985 kb on + strand, within IAI46_05560at 1197.986 kb on - strand, within IAI46_05560at 1197.991 kb on + strand, within IAI46_05560at 1197.991 kb on + strand, within IAI46_05560at 1197.992 kb on - strand, within IAI46_05560at 1198.006 kb on + strand, within IAI46_05560at 1198.006 kb on + strand, within IAI46_05560at 1198.075 kb on + strand, within IAI46_05560at 1198.075 kb on + strand, within IAI46_05560at 1198.076 kb on - strand, within IAI46_05560at 1198.153 kb on + strandat 1198.154 kb on - strandat 1198.296 kb on - strandat 1198.296 kb on - strandat 1198.306 kb on + strandat 1198.306 kb on + strandat 1198.408 kb on - strand, within IAI46_05565at 1198.418 kb on + strand, within IAI46_05565at 1198.520 kb on + strand, within IAI46_05565at 1198.520 kb on + strand, within IAI46_05565at 1198.520 kb on + strand, within IAI46_05565at 1198.520 kb on + strand, within IAI46_05565at 1198.521 kb on - strand, within IAI46_05565at 1198.521 kb on - strand, within IAI46_05565at 1198.521 kb on - strand, within IAI46_05565at 1198.521 kb on - strand, within IAI46_05565at 1198.521 kb on - strand, within IAI46_05565at 1198.774 kb on + strandat 1198.774 kb on + strandat 1198.775 kb on - strandat 1198.785 kb on + strandat 1198.785 kb on + strandat 1198.786 kb on - strandat 1198.795 kb on + strandat 1198.795 kb on + strandat 1198.796 kb on - strandat 1198.843 kb on + strand, within IAI46_05570at 1198.843 kb on + strand, within IAI46_05570at 1198.843 kb on + strand, within IAI46_05570at 1198.843 kb on + strand, within IAI46_05570at 1198.844 kb on - strand, within IAI46_05570at 1198.844 kb on - strand, within IAI46_05570at 1198.844 kb on - strand, within IAI46_05570at 1198.844 kb on - strand, within IAI46_05570at 1198.844 kb on - strand, within IAI46_05570at 1198.868 kb on - strand, within IAI46_05570at 1198.992 kb on + strand, within IAI46_05570at 1199.014 kb on - strand, within IAI46_05570at 1199.014 kb on - strand, within IAI46_05570at 1199.073 kb on + strand, within IAI46_05570at 1199.076 kb on + strand, within IAI46_05570at 1199.076 kb on + strand, within IAI46_05570at 1199.077 kb on - strand, within IAI46_05570at 1199.105 kb on + strandat 1199.105 kb on + strandat 1199.105 kb on + strandat 1199.106 kb on - strandat 1199.106 kb on - strandat 1199.106 kb on - strandat 1199.106 kb on - strandat 1199.112 kb on - strandat 1199.188 kb on + strandat 1199.200 kb on + strandat 1199.200 kb on + strandat 1199.200 kb on + strandat 1199.200 kb on + strandat 1199.201 kb on - strandat 1199.201 kb on - strandat 1199.215 kb on - strandat 1199.240 kb on - strand, within IAI46_05575at 1199.289 kb on + strand, within IAI46_05575at 1199.289 kb on + strand, within IAI46_05575at 1199.290 kb on - strand, within IAI46_05575at 1199.315 kb on + strand, within IAI46_05575at 1199.315 kb on + strand, within IAI46_05575at 1199.316 kb on - strand, within IAI46_05575at 1199.318 kb on + strand, within IAI46_05575at 1199.318 kb on + strand, within IAI46_05575at 1199.319 kb on - strand, within IAI46_05575at 1199.319 kb on - strand, within IAI46_05575at 1199.319 kb on - strand, within IAI46_05575at 1199.370 kb on - strand, within IAI46_05575at 1199.370 kb on - strand, within IAI46_05575at 1199.385 kb on + strand, within IAI46_05575at 1199.385 kb on + strand, within IAI46_05575at 1199.385 kb on + strand, within IAI46_05575at 1199.385 kb on + strand, within IAI46_05575at 1199.437 kb on + strand, within IAI46_05575at 1199.437 kb on + strand, within IAI46_05575at 1199.670 kb on + strand, within IAI46_05575at 1199.737 kb on - strand, within IAI46_05575at 1199.737 kb on - strand, within IAI46_05575at 1199.737 kb on - strand, within IAI46_05575at 1199.768 kb on - strand, within IAI46_05575at 1199.768 kb on - strand, within IAI46_05575

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,197,373 + IAI46_05560 0.55 +0.0
1,197,514 + IAI46_05560 0.62 +0.2
1,197,555 + IAI46_05560 0.64 +0.0
1,197,555 + IAI46_05560 0.64 -0.3
1,197,555 + IAI46_05560 0.64 +0.7
1,197,556 - IAI46_05560 0.64 +0.3
1,197,556 - IAI46_05560 0.64 +1.4
1,197,556 - IAI46_05560 0.64 -0.7
1,197,557 + IAI46_05560 0.64 -0.1
1,197,557 + IAI46_05560 0.64 -0.2
1,197,558 - IAI46_05560 0.64 +1.5
1,197,558 - IAI46_05560 0.64 +0.6
1,197,558 - IAI46_05560 0.64 -2.2
1,197,560 - IAI46_05560 0.64 -0.5
1,197,560 - IAI46_05560 0.64 -0.2
1,197,560 - IAI46_05560 0.64 -0.2
1,197,640 + IAI46_05560 0.68 +0.1
1,197,640 + IAI46_05560 0.68 +0.3
1,197,641 - IAI46_05560 0.68 -0.5
1,197,701 - IAI46_05560 0.71 -0.4
1,197,703 + IAI46_05560 0.72 +1.1
1,197,704 - IAI46_05560 0.72 -0.0
1,197,756 + IAI46_05560 0.74 -0.6
1,197,756 + IAI46_05560 0.74 +1.1
1,197,757 - IAI46_05560 0.74 +0.1
1,197,757 - IAI46_05560 0.74 -0.4
1,197,757 - IAI46_05560 0.74 -0.3
1,197,779 - IAI46_05560 0.75 -0.8
1,197,800 - IAI46_05560 0.76 +0.5
1,197,800 - IAI46_05560 0.76 -0.9
1,197,868 + IAI46_05560 0.80 +0.4
1,197,868 + IAI46_05560 0.80 +0.5
1,197,868 + IAI46_05560 0.80 -1.2
1,197,868 + IAI46_05560 0.80 +0.0
1,197,869 - IAI46_05560 0.80 +0.1
1,197,869 - IAI46_05560 0.80 +0.7
1,197,901 + IAI46_05560 0.81 -0.9
1,197,901 + IAI46_05560 0.81 +0.3
1,197,901 + IAI46_05560 0.81 +0.3
1,197,902 - IAI46_05560 0.81 +0.0
1,197,902 - IAI46_05560 0.81 +0.9
1,197,902 - IAI46_05560 0.81 +0.1
1,197,926 + IAI46_05560 0.83 +1.3
1,197,926 + IAI46_05560 0.83 -0.5
1,197,926 + IAI46_05560 0.83 +0.9
1,197,934 + IAI46_05560 0.83 +0.6
1,197,935 - IAI46_05560 0.83 -0.0
1,197,954 + IAI46_05560 0.84 +0.7
1,197,959 - IAI46_05560 0.84 +0.4
1,197,980 + IAI46_05560 0.85 +0.4
1,197,980 + IAI46_05560 0.85 +0.0
1,197,980 + IAI46_05560 0.85 -0.2
1,197,981 - IAI46_05560 0.85 -0.0
1,197,985 + IAI46_05560 0.85 -0.0
1,197,985 + IAI46_05560 0.85 -0.4
1,197,985 + IAI46_05560 0.85 -0.6
1,197,986 - IAI46_05560 0.86 +0.2
1,197,991 + IAI46_05560 0.86 -0.3
1,197,991 + IAI46_05560 0.86 -0.0
1,197,992 - IAI46_05560 0.86 +0.0
1,198,006 + IAI46_05560 0.86 +0.8
1,198,006 + IAI46_05560 0.86 +0.1
1,198,075 + IAI46_05560 0.90 +0.2
1,198,075 + IAI46_05560 0.90 -1.3
1,198,076 - IAI46_05560 0.90 -0.5
1,198,153 + +0.2
1,198,154 - +0.1
1,198,296 - -0.0
1,198,296 - +0.4
1,198,306 + +0.1
1,198,306 + +0.3
1,198,408 - IAI46_05565 0.23 -0.2
1,198,418 + IAI46_05565 0.25 +1.3
1,198,520 + IAI46_05565 0.44 +1.1
1,198,520 + IAI46_05565 0.44 +0.4
1,198,520 + IAI46_05565 0.44 +0.2
1,198,520 + IAI46_05565 0.44 -0.2
1,198,521 - IAI46_05565 0.45 +1.5
1,198,521 - IAI46_05565 0.45 -0.5
1,198,521 - IAI46_05565 0.45 +0.2
1,198,521 - IAI46_05565 0.45 -0.1
1,198,521 - IAI46_05565 0.45 +0.1
1,198,774 + +0.2
1,198,774 + +0.3
1,198,775 - +0.8
1,198,785 + -0.1
1,198,785 + -0.0
1,198,786 - -0.9
1,198,795 + +0.3
1,198,795 + -0.1
1,198,796 - +0.1
1,198,843 + IAI46_05570 0.12 -0.8
1,198,843 + IAI46_05570 0.12 -0.1
1,198,843 + IAI46_05570 0.12 +0.4
1,198,843 + IAI46_05570 0.12 -0.2
1,198,844 - IAI46_05570 0.12 -0.0
1,198,844 - IAI46_05570 0.12 +0.4
1,198,844 - IAI46_05570 0.12 +0.1
1,198,844 - IAI46_05570 0.12 -1.5
1,198,844 - IAI46_05570 0.12 +0.3
1,198,868 - IAI46_05570 0.20 +0.2
1,198,992 + IAI46_05570 0.61 -0.6
1,199,014 - IAI46_05570 0.69 +0.1
1,199,014 - IAI46_05570 0.69 -0.8
1,199,073 + IAI46_05570 0.88 -0.0
1,199,076 + IAI46_05570 0.89 +0.3
1,199,076 + IAI46_05570 0.89 +0.5
1,199,077 - IAI46_05570 0.90 -0.1
1,199,105 + +0.6
1,199,105 + +0.4
1,199,105 + -0.1
1,199,106 - +0.3
1,199,106 - +0.6
1,199,106 - +0.2
1,199,106 - +2.2
1,199,112 - -0.5
1,199,188 + -0.6
1,199,200 + +0.2
1,199,200 + -0.0
1,199,200 + +0.8
1,199,200 + -0.6
1,199,201 - -0.8
1,199,201 - -1.6
1,199,215 - -0.3
1,199,240 - IAI46_05575 0.12 +0.4
1,199,289 + IAI46_05575 0.16 -0.4
1,199,289 + IAI46_05575 0.16 +0.3
1,199,290 - IAI46_05575 0.16 -0.6
1,199,315 + IAI46_05575 0.19 +0.1
1,199,315 + IAI46_05575 0.19 -0.1
1,199,316 - IAI46_05575 0.19 +0.2
1,199,318 + IAI46_05575 0.19 +1.2
1,199,318 + IAI46_05575 0.19 +0.4
1,199,319 - IAI46_05575 0.19 +0.3
1,199,319 - IAI46_05575 0.19 +1.2
1,199,319 - IAI46_05575 0.19 +0.3
1,199,370 - IAI46_05575 0.24 -0.3
1,199,370 - IAI46_05575 0.24 -0.2
1,199,385 + IAI46_05575 0.26 +0.5
1,199,385 + IAI46_05575 0.26 -0.2
1,199,385 + IAI46_05575 0.26 +0.0
1,199,385 + IAI46_05575 0.26 -0.0
1,199,437 + IAI46_05575 0.31 -0.0
1,199,437 + IAI46_05575 0.31 +0.2
1,199,670 + IAI46_05575 0.53 -0.6
1,199,737 - IAI46_05575 0.59 +0.6
1,199,737 - IAI46_05575 0.59 -0.0
1,199,737 - IAI46_05575 0.59 +0.2
1,199,768 - IAI46_05575 0.62 +0.8
1,199,768 - IAI46_05575 0.62 -0.2

Or see this region's nucleotide sequence