Strain Fitness in Serratia liquefaciens MT49 around IAI46_04425

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04420 and IAI46_04425 are separated by 60 nucleotidesIAI46_04425 and IAI46_04430 are separated by 115 nucleotides IAI46_04420: IAI46_04420 - esterase FrsA, at 945,942 to 947,189 _04420 IAI46_04425: IAI46_04425 - sigma factor-binding protein Crl, at 947,250 to 947,651 _04425 IAI46_04430: IAI46_04430 - glutamate 5-kinase, at 947,767 to 948,870 _04430 Position (kb) 947 948Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 946.437 kb on + strand, within IAI46_04420at 946.438 kb on - strand, within IAI46_04420at 946.439 kb on + strand, within IAI46_04420at 946.440 kb on - strand, within IAI46_04420at 946.653 kb on + strand, within IAI46_04420at 946.654 kb on - strand, within IAI46_04420at 946.654 kb on - strand, within IAI46_04420at 946.654 kb on - strand, within IAI46_04420at 946.654 kb on - strand, within IAI46_04420at 946.783 kb on + strand, within IAI46_04420at 946.794 kb on + strand, within IAI46_04420at 946.795 kb on - strand, within IAI46_04420at 946.893 kb on + strand, within IAI46_04420at 946.893 kb on + strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.968 kb on + strand, within IAI46_04420at 946.968 kb on + strand, within IAI46_04420at 946.968 kb on + strand, within IAI46_04420at 946.969 kb on - strand, within IAI46_04420at 946.969 kb on - strand, within IAI46_04420at 947.127 kb on + strandat 947.127 kb on + strandat 947.231 kb on - strandat 947.381 kb on + strand, within IAI46_04425at 947.381 kb on + strand, within IAI46_04425at 947.454 kb on + strand, within IAI46_04425at 947.455 kb on - strand, within IAI46_04425at 947.460 kb on + strand, within IAI46_04425at 947.511 kb on - strand, within IAI46_04425at 947.669 kb on + strandat 947.669 kb on + strandat 947.669 kb on + strandat 947.669 kb on + strandat 947.669 kb on + strandat 947.670 kb on - strandat 947.670 kb on - strandat 947.670 kb on - strandat 947.670 kb on - strandat 947.719 kb on + strandat 947.720 kb on - strandat 947.739 kb on + strandat 947.739 kb on + strandat 947.740 kb on - strandat 947.750 kb on + strandat 947.750 kb on + strandat 947.751 kb on - strandat 947.763 kb on + strandat 947.763 kb on + strandat 947.763 kb on + strandat 947.764 kb on - strandat 947.766 kb on + strandat 947.835 kb on + strandat 947.836 kb on - strandat 947.861 kb on + strandat 947.862 kb on - strandat 948.151 kb on - strand, within IAI46_04430at 948.151 kb on - strand, within IAI46_04430at 948.151 kb on - strand, within IAI46_04430at 948.289 kb on + strand, within IAI46_04430at 948.306 kb on + strand, within IAI46_04430at 948.307 kb on - strand, within IAI46_04430at 948.307 kb on - strand, within IAI46_04430at 948.310 kb on - strand, within IAI46_04430at 948.310 kb on - strand, within IAI46_04430at 948.501 kb on + strand, within IAI46_04430at 948.510 kb on + strand, within IAI46_04430

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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946,437 + IAI46_04420 0.40 -0.2
946,438 - IAI46_04420 0.40 +0.3
946,439 + IAI46_04420 0.40 -0.7
946,440 - IAI46_04420 0.40 -0.3
946,653 + IAI46_04420 0.57 +0.7
946,654 - IAI46_04420 0.57 +0.4
946,654 - IAI46_04420 0.57 +0.9
946,654 - IAI46_04420 0.57 +0.7
946,654 - IAI46_04420 0.57 +0.8
946,783 + IAI46_04420 0.67 +0.2
946,794 + IAI46_04420 0.68 -0.1
946,795 - IAI46_04420 0.68 +0.4
946,893 + IAI46_04420 0.76 -0.6
946,893 + IAI46_04420 0.76 +0.3
946,894 - IAI46_04420 0.76 +1.1
946,894 - IAI46_04420 0.76 +0.1
946,894 - IAI46_04420 0.76 -0.6
946,894 - IAI46_04420 0.76 +0.1
946,894 - IAI46_04420 0.76 -0.4
946,894 - IAI46_04420 0.76 +0.8
946,968 + IAI46_04420 0.82 +1.4
946,968 + IAI46_04420 0.82 -0.9
946,968 + IAI46_04420 0.82 +1.8
946,969 - IAI46_04420 0.82 +0.1
946,969 - IAI46_04420 0.82 +1.4
947,127 + +0.2
947,127 + -0.3
947,231 - +0.2
947,381 + IAI46_04425 0.33 +0.1
947,381 + IAI46_04425 0.33 -0.5
947,454 + IAI46_04425 0.51 +1.1
947,455 - IAI46_04425 0.51 -0.5
947,460 + IAI46_04425 0.52 +0.4
947,511 - IAI46_04425 0.65 +1.3
947,669 + -0.2
947,669 + -0.8
947,669 + +0.4
947,669 + +0.6
947,669 + -0.9
947,670 - -0.0
947,670 - +1.5
947,670 - -0.5
947,670 - +0.4
947,719 + +0.3
947,720 - +0.7
947,739 + +0.1
947,739 + +0.3
947,740 - +0.6
947,750 + +0.8
947,750 + +1.0
947,751 - +0.5
947,763 + -1.1
947,763 + +0.1
947,763 + -0.1
947,764 - -1.3
947,766 + -0.7
947,835 + -0.2
947,836 - -1.6
947,861 + -1.0
947,862 - +0.7
948,151 - IAI46_04430 0.35 -0.9
948,151 - IAI46_04430 0.35 -0.2
948,151 - IAI46_04430 0.35 -0.4
948,289 + IAI46_04430 0.47 -0.5
948,306 + IAI46_04430 0.49 -1.0
948,307 - IAI46_04430 0.49 -1.8
948,307 - IAI46_04430 0.49 -0.9
948,310 - IAI46_04430 0.49 -1.3
948,310 - IAI46_04430 0.49 -0.8
948,501 + IAI46_04430 0.66 -1.1
948,510 + IAI46_04430 0.67 -2.8

Or see this region's nucleotide sequence