Strain Fitness in Serratia liquefaciens MT49 around IAI46_03625

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03620 and IAI46_03625 are separated by 10 nucleotidesIAI46_03625 and IAI46_03630 are separated by 46 nucleotides IAI46_03620: IAI46_03620 - NAD(P)/FAD-dependent oxidoreductase, at 787,601 to 788,791 _03620 IAI46_03625: IAI46_03625 - hypothetical protein, at 788,802 to 789,173 _03625 IAI46_03630: IAI46_03630 - methionine gamma-lyase, at 789,220 to 790,410 _03630 Position (kb) 788 789 790Strain fitness (log2 ratio) -2 -1 0 1 2at 787.834 kb on + strand, within IAI46_03620at 787.864 kb on - strand, within IAI46_03620at 787.907 kb on + strand, within IAI46_03620at 787.908 kb on - strand, within IAI46_03620at 787.989 kb on - strand, within IAI46_03620at 787.994 kb on + strand, within IAI46_03620at 787.994 kb on + strand, within IAI46_03620at 788.138 kb on + strand, within IAI46_03620at 788.180 kb on + strand, within IAI46_03620at 788.181 kb on - strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.186 kb on + strand, within IAI46_03620at 788.186 kb on + strand, within IAI46_03620at 788.296 kb on + strand, within IAI46_03620at 788.365 kb on + strand, within IAI46_03620at 788.365 kb on + strand, within IAI46_03620at 788.481 kb on - strand, within IAI46_03620at 788.481 kb on - strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.512 kb on + strand, within IAI46_03620at 788.621 kb on + strand, within IAI46_03620at 788.682 kb on - strandat 788.682 kb on - strandat 788.750 kb on - strandat 788.848 kb on + strand, within IAI46_03625at 788.848 kb on + strand, within IAI46_03625at 788.849 kb on - strand, within IAI46_03625at 788.849 kb on - strand, within IAI46_03625at 789.064 kb on - strand, within IAI46_03625at 789.064 kb on - strand, within IAI46_03625at 789.117 kb on - strand, within IAI46_03625at 789.140 kb on + strandat 789.140 kb on + strandat 789.180 kb on + strandat 789.180 kb on + strandat 789.181 kb on - strandat 789.181 kb on - strandat 789.208 kb on + strandat 789.272 kb on - strandat 789.286 kb on + strandat 789.315 kb on + strandat 789.331 kb on - strandat 789.349 kb on + strand, within IAI46_03630at 789.349 kb on + strand, within IAI46_03630at 789.350 kb on - strand, within IAI46_03630at 789.350 kb on - strand, within IAI46_03630at 789.484 kb on - strand, within IAI46_03630at 789.679 kb on + strand, within IAI46_03630at 789.679 kb on + strand, within IAI46_03630at 789.680 kb on - strand, within IAI46_03630at 789.775 kb on - strand, within IAI46_03630at 789.781 kb on + strand, within IAI46_03630at 789.781 kb on + strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.826 kb on - strand, within IAI46_03630at 789.826 kb on - strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.923 kb on + strand, within IAI46_03630at 790.012 kb on - strand, within IAI46_03630at 790.074 kb on - strand, within IAI46_03630at 790.085 kb on - strand, within IAI46_03630at 790.085 kb on - strand, within IAI46_03630at 790.115 kb on - strand, within IAI46_03630at 790.115 kb on - strand, within IAI46_03630

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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787,834 + IAI46_03620 0.20 -0.5
787,864 - IAI46_03620 0.22 -0.4
787,907 + IAI46_03620 0.26 -1.2
787,908 - IAI46_03620 0.26 -0.5
787,989 - IAI46_03620 0.33 -0.2
787,994 + IAI46_03620 0.33 -0.0
787,994 + IAI46_03620 0.33 +0.7
788,138 + IAI46_03620 0.45 +0.9
788,180 + IAI46_03620 0.49 -0.4
788,181 - IAI46_03620 0.49 +1.2
788,182 + IAI46_03620 0.49 -1.0
788,182 + IAI46_03620 0.49 -2.6
788,182 + IAI46_03620 0.49 +0.1
788,182 + IAI46_03620 0.49 +0.3
788,183 - IAI46_03620 0.49 +0.1
788,183 - IAI46_03620 0.49 +0.4
788,183 - IAI46_03620 0.49 +0.5
788,183 - IAI46_03620 0.49 -0.1
788,183 - IAI46_03620 0.49 +0.8
788,186 + IAI46_03620 0.49 +1.2
788,186 + IAI46_03620 0.49 +1.5
788,296 + IAI46_03620 0.58 +0.5
788,365 + IAI46_03620 0.64 +0.1
788,365 + IAI46_03620 0.64 +0.9
788,481 - IAI46_03620 0.74 +0.3
788,481 - IAI46_03620 0.74 +1.3
788,498 + IAI46_03620 0.75 -0.3
788,498 + IAI46_03620 0.75 -0.4
788,498 + IAI46_03620 0.75 +1.6
788,498 + IAI46_03620 0.75 -0.3
788,498 + IAI46_03620 0.75 -1.0
788,498 + IAI46_03620 0.75 +0.3
788,499 - IAI46_03620 0.75 +1.1
788,499 - IAI46_03620 0.75 +0.6
788,499 - IAI46_03620 0.75 -0.8
788,499 - IAI46_03620 0.75 +0.2
788,499 - IAI46_03620 0.75 -0.2
788,499 - IAI46_03620 0.75 +0.7
788,499 - IAI46_03620 0.75 +1.1
788,499 - IAI46_03620 0.75 +1.3
788,512 + IAI46_03620 0.76 +0.6
788,621 + IAI46_03620 0.86 +0.1
788,682 - +0.1
788,682 - -0.6
788,750 - +1.6
788,848 + IAI46_03625 0.12 +0.1
788,848 + IAI46_03625 0.12 +0.3
788,849 - IAI46_03625 0.13 -0.3
788,849 - IAI46_03625 0.13 +0.5
789,064 - IAI46_03625 0.70 +0.1
789,064 - IAI46_03625 0.70 -0.4
789,117 - IAI46_03625 0.85 +0.9
789,140 + +0.2
789,140 + +0.8
789,180 + +0.2
789,180 + -1.5
789,181 - -0.4
789,181 - +0.0
789,208 + -0.2
789,272 - +0.5
789,286 + +0.8
789,315 + -0.0
789,331 - +0.9
789,349 + IAI46_03630 0.11 +1.9
789,349 + IAI46_03630 0.11 +0.3
789,350 - IAI46_03630 0.11 +0.8
789,350 - IAI46_03630 0.11 +0.9
789,484 - IAI46_03630 0.22 +0.8
789,679 + IAI46_03630 0.39 +0.0
789,679 + IAI46_03630 0.39 +0.1
789,680 - IAI46_03630 0.39 -0.4
789,775 - IAI46_03630 0.47 +1.0
789,781 + IAI46_03630 0.47 +0.0
789,781 + IAI46_03630 0.47 +0.5
789,782 - IAI46_03630 0.47 +0.5
789,782 - IAI46_03630 0.47 +1.5
789,782 - IAI46_03630 0.47 -0.6
789,782 - IAI46_03630 0.47 +0.7
789,782 - IAI46_03630 0.47 +0.8
789,782 - IAI46_03630 0.47 -0.3
789,825 + IAI46_03630 0.51 -0.2
789,825 + IAI46_03630 0.51 +0.9
789,825 + IAI46_03630 0.51 +0.5
789,825 + IAI46_03630 0.51 +0.0
789,826 - IAI46_03630 0.51 -0.7
789,826 - IAI46_03630 0.51 -0.2
789,827 + IAI46_03630 0.51 +0.5
789,827 + IAI46_03630 0.51 +0.2
789,827 + IAI46_03630 0.51 +0.7
789,827 + IAI46_03630 0.51 -0.5
789,828 - IAI46_03630 0.51 -0.1
789,828 - IAI46_03630 0.51 -0.7
789,828 - IAI46_03630 0.51 +0.5
789,828 - IAI46_03630 0.51 -0.2
789,850 + IAI46_03630 0.53 -0.8
789,850 + IAI46_03630 0.53 +0.0
789,850 + IAI46_03630 0.53 +0.2
789,851 - IAI46_03630 0.53 +0.4
789,851 - IAI46_03630 0.53 +0.0
789,851 - IAI46_03630 0.53 +1.3
789,923 + IAI46_03630 0.59 -0.1
790,012 - IAI46_03630 0.66 +0.6
790,074 - IAI46_03630 0.72 -1.2
790,085 - IAI46_03630 0.73 +0.4
790,085 - IAI46_03630 0.73 +0.4
790,115 - IAI46_03630 0.75 +0.5
790,115 - IAI46_03630 0.75 -0.5

Or see this region's nucleotide sequence