Strain Fitness in Serratia liquefaciens MT49 around IAI46_03615

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03610 and IAI46_03615 are separated by 81 nucleotidesIAI46_03615 and IAI46_03620 are separated by 297 nucleotides IAI46_03610: IAI46_03610 - CTP synthase (glutamine hydrolyzing), at 784,289 to 785,926 _03610 IAI46_03615: IAI46_03615 - phosphopyruvate hydratase, at 786,008 to 787,303 _03615 IAI46_03620: IAI46_03620 - NAD(P)/FAD-dependent oxidoreductase, at 787,601 to 788,791 _03620 Position (kb) 786 787 788Strain fitness (log2 ratio) -2 -1 0 1at 785.924 kb on + strandat 785.924 kb on + strandat 785.980 kb on + strandat 785.980 kb on + strandat 785.985 kb on + strandat 787.291 kb on + strandat 787.301 kb on + strandat 787.323 kb on + strandat 787.324 kb on - strandat 787.370 kb on + strandat 787.504 kb on + strandat 787.504 kb on + strandat 787.529 kb on + strandat 787.538 kb on - strandat 787.647 kb on + strandat 787.648 kb on - strandat 787.686 kb on + strandat 787.696 kb on + strandat 787.739 kb on + strand, within IAI46_03620at 787.754 kb on - strand, within IAI46_03620at 787.758 kb on - strand, within IAI46_03620at 787.758 kb on - strand, within IAI46_03620at 787.758 kb on - strand, within IAI46_03620at 787.834 kb on + strand, within IAI46_03620at 787.864 kb on - strand, within IAI46_03620at 787.907 kb on + strand, within IAI46_03620at 787.908 kb on - strand, within IAI46_03620at 787.989 kb on - strand, within IAI46_03620at 787.994 kb on + strand, within IAI46_03620at 787.994 kb on + strand, within IAI46_03620at 788.138 kb on + strand, within IAI46_03620at 788.180 kb on + strand, within IAI46_03620at 788.181 kb on - strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.186 kb on + strand, within IAI46_03620at 788.186 kb on + strand, within IAI46_03620at 788.296 kb on + strand, within IAI46_03620

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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785,924 + +0.7
785,924 + +0.5
785,980 + +0.8
785,980 + -0.5
785,985 + -0.3
787,291 + -0.0
787,301 + -1.8
787,323 + +0.5
787,324 - -0.1
787,370 + -0.5
787,504 + +0.0
787,504 + +0.1
787,529 + +1.1
787,538 - -0.3
787,647 + -0.4
787,648 - +0.3
787,686 + -0.0
787,696 + +0.1
787,739 + IAI46_03620 0.12 -0.2
787,754 - IAI46_03620 0.13 -1.5
787,758 - IAI46_03620 0.13 +0.6
787,758 - IAI46_03620 0.13 -0.5
787,758 - IAI46_03620 0.13 +1.5
787,834 + IAI46_03620 0.20 -0.5
787,864 - IAI46_03620 0.22 -0.4
787,907 + IAI46_03620 0.26 -1.2
787,908 - IAI46_03620 0.26 -0.5
787,989 - IAI46_03620 0.33 -0.2
787,994 + IAI46_03620 0.33 -0.0
787,994 + IAI46_03620 0.33 +0.7
788,138 + IAI46_03620 0.45 +0.9
788,180 + IAI46_03620 0.49 -0.4
788,181 - IAI46_03620 0.49 +1.2
788,182 + IAI46_03620 0.49 -1.0
788,182 + IAI46_03620 0.49 -2.6
788,182 + IAI46_03620 0.49 +0.1
788,182 + IAI46_03620 0.49 +0.3
788,183 - IAI46_03620 0.49 +0.1
788,183 - IAI46_03620 0.49 +0.4
788,183 - IAI46_03620 0.49 +0.5
788,183 - IAI46_03620 0.49 -0.1
788,183 - IAI46_03620 0.49 +0.8
788,186 + IAI46_03620 0.49 +1.2
788,186 + IAI46_03620 0.49 +1.5
788,296 + IAI46_03620 0.58 +0.5

Or see this region's nucleotide sequence