Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03590 and IAI46_03595 are separated by 68 nucleotides IAI46_03595 and IAI46_03600 are separated by 9 nucleotides
IAI46_03590: IAI46_03590 - two-component sensor histidine kinase BarA, at 776,572 to 779,304
_03590
IAI46_03595: IAI46_03595 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 779,373 to 780,722
_03595
IAI46_03600: IAI46_03600 - GTP diphosphokinase, at 780,732 to 782,963
_03600
Position (kb) 779
780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 778.392 kb on + strand, within IAI46_03590 at 778.605 kb on + strand, within IAI46_03590 at 778.606 kb on - strand, within IAI46_03590 at 778.624 kb on - strand, within IAI46_03590 at 778.624 kb on - strand, within IAI46_03590 at 778.675 kb on - strand, within IAI46_03590 at 778.683 kb on + strand, within IAI46_03590 at 778.684 kb on - strand, within IAI46_03590 at 778.740 kb on + strand, within IAI46_03590 at 778.741 kb on - strand, within IAI46_03590 at 778.787 kb on + strand, within IAI46_03590 at 778.788 kb on - strand, within IAI46_03590 at 778.788 kb on - strand, within IAI46_03590 at 778.832 kb on + strand, within IAI46_03590 at 778.833 kb on - strand, within IAI46_03590 at 778.833 kb on - strand, within IAI46_03590 at 779.003 kb on + strand, within IAI46_03590 at 779.026 kb on - strand, within IAI46_03590 at 779.041 kb on + strand at 779.042 kb on - strand at 779.061 kb on + strand at 779.062 kb on - strand at 779.062 kb on - strand at 779.080 kb on + strand at 779.080 kb on + strand at 779.132 kb on + strand at 779.199 kb on - strand at 779.205 kb on - strand at 779.205 kb on - strand at 779.205 kb on - strand at 779.215 kb on + strand at 779.215 kb on + strand at 779.216 kb on - strand at 779.294 kb on + strand at 779.294 kb on + strand at 779.295 kb on - strand at 779.341 kb on - strand at 779.346 kb on - strand at 779.346 kb on - strand at 779.373 kb on - strand at 779.432 kb on - strand at 779.432 kb on - strand at 779.512 kb on + strand, within IAI46_03595 at 779.772 kb on + strand, within IAI46_03595 at 780.091 kb on - strand, within IAI46_03595 at 780.111 kb on - strand, within IAI46_03595 at 780.141 kb on + strand, within IAI46_03595 at 780.141 kb on + strand, within IAI46_03595 at 780.141 kb on + strand, within IAI46_03595 at 780.141 kb on + strand, within IAI46_03595 at 780.142 kb on - strand, within IAI46_03595 at 780.142 kb on - strand, within IAI46_03595 at 780.145 kb on - strand, within IAI46_03595 at 780.161 kb on - strand, within IAI46_03595 at 780.161 kb on - strand, within IAI46_03595 at 780.166 kb on + strand, within IAI46_03595 at 780.166 kb on + strand, within IAI46_03595 at 780.167 kb on - strand, within IAI46_03595 at 780.167 kb on - strand, within IAI46_03595 at 780.196 kb on + strand, within IAI46_03595 at 780.196 kb on + strand, within IAI46_03595 at 780.208 kb on + strand, within IAI46_03595 at 780.208 kb on + strand, within IAI46_03595 at 780.209 kb on - strand, within IAI46_03595 at 780.209 kb on - strand, within IAI46_03595 at 780.209 kb on - strand, within IAI46_03595 at 780.248 kb on + strand, within IAI46_03595 at 780.248 kb on + strand, within IAI46_03595 at 780.249 kb on - strand, within IAI46_03595 at 780.340 kb on + strand, within IAI46_03595 at 780.340 kb on + strand, within IAI46_03595 at 780.340 kb on + strand, within IAI46_03595 at 780.340 kb on + strand, within IAI46_03595 at 780.341 kb on - strand, within IAI46_03595 at 780.341 kb on - strand, within IAI46_03595 at 780.341 kb on - strand, within IAI46_03595 at 780.341 kb on - strand, within IAI46_03595 at 780.341 kb on - strand, within IAI46_03595 at 780.341 kb on - strand, within IAI46_03595 at 780.362 kb on - strand, within IAI46_03595 at 780.362 kb on - strand, within IAI46_03595 at 780.376 kb on - strand, within IAI46_03595 at 780.377 kb on + strand, within IAI46_03595 at 780.377 kb on + strand, within IAI46_03595 at 780.378 kb on - strand, within IAI46_03595 at 780.386 kb on + strand, within IAI46_03595 at 780.387 kb on - strand, within IAI46_03595 at 780.390 kb on - strand, within IAI46_03595 at 780.393 kb on - strand, within IAI46_03595 at 780.524 kb on + strand, within IAI46_03595 at 780.525 kb on - strand, within IAI46_03595 at 780.531 kb on - strand, within IAI46_03595 at 780.555 kb on + strand, within IAI46_03595 at 780.555 kb on + strand, within IAI46_03595 at 780.555 kb on + strand, within IAI46_03595 at 780.556 kb on - strand, within IAI46_03595 at 780.556 kb on - strand, within IAI46_03595 at 780.556 kb on - strand, within IAI46_03595 at 780.644 kb on + strand at 780.644 kb on + strand at 780.721 kb on - strand at 780.721 kb on - strand at 780.813 kb on - strand at 780.881 kb on + strand at 780.881 kb on + strand at 780.932 kb on + strand at 781.044 kb on + strand, within IAI46_03600 at 781.044 kb on + strand, within IAI46_03600 at 781.044 kb on + strand, within IAI46_03600 at 781.045 kb on - strand, within IAI46_03600 at 781.045 kb on - strand, within IAI46_03600 at 781.067 kb on + strand, within IAI46_03600 at 781.271 kb on + strand, within IAI46_03600 at 781.275 kb on + strand, within IAI46_03600 at 781.275 kb on + strand, within IAI46_03600 at 781.275 kb on + strand, within IAI46_03600 at 781.276 kb on - strand, within IAI46_03600 at 781.276 kb on - strand, within IAI46_03600 at 781.276 kb on - strand, within IAI46_03600 at 781.362 kb on + strand, within IAI46_03600 at 781.363 kb on - strand, within IAI46_03600 at 781.363 kb on - strand, within IAI46_03600 at 781.363 kb on - strand, within IAI46_03600 at 781.443 kb on - strand, within IAI46_03600 at 781.479 kb on + strand, within IAI46_03600 at 781.479 kb on + strand, within IAI46_03600 at 781.479 kb on + strand, within IAI46_03600 at 781.479 kb on + strand, within IAI46_03600 at 781.479 kb on + strand, within IAI46_03600 at 781.480 kb on - strand, within IAI46_03600 at 781.480 kb on - strand, within IAI46_03600 at 781.500 kb on + strand, within IAI46_03600 at 781.500 kb on + strand, within IAI46_03600 at 781.501 kb on - strand, within IAI46_03600 at 781.501 kb on - strand, within IAI46_03600 at 781.600 kb on - strand, within IAI46_03600 at 781.622 kb on + strand, within IAI46_03600 at 781.660 kb on - strand, within IAI46_03600 at 781.660 kb on - strand, within IAI46_03600 at 781.660 kb on - strand, within IAI46_03600 at 781.705 kb on + strand, within IAI46_03600 at 781.705 kb on + strand, within IAI46_03600 at 781.705 kb on + strand, within IAI46_03600 at 781.705 kb on + strand, within IAI46_03600 at 781.705 kb on + strand, within IAI46_03600 at 781.706 kb on - strand, within IAI46_03600 at 781.708 kb on + strand, within IAI46_03600 at 781.708 kb on + strand, within IAI46_03600
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic remove 778,392 + IAI46_03590 0.67 +1.1 778,605 + IAI46_03590 0.74 -0.2 778,606 - IAI46_03590 0.74 +0.2 778,624 - IAI46_03590 0.75 +0.1 778,624 - IAI46_03590 0.75 +0.4 778,675 - IAI46_03590 0.77 -0.3 778,683 + IAI46_03590 0.77 -0.0 778,684 - IAI46_03590 0.77 -0.8 778,740 + IAI46_03590 0.79 +0.2 778,741 - IAI46_03590 0.79 -0.3 778,787 + IAI46_03590 0.81 -0.2 778,788 - IAI46_03590 0.81 +0.2 778,788 - IAI46_03590 0.81 +1.1 778,832 + IAI46_03590 0.83 +0.0 778,833 - IAI46_03590 0.83 +0.8 778,833 - IAI46_03590 0.83 -0.1 779,003 + IAI46_03590 0.89 +0.4 779,026 - IAI46_03590 0.90 +0.3 779,041 + +1.0 779,042 - -0.3 779,061 + -0.4 779,062 - +0.4 779,062 - -0.0 779,080 + +0.5 779,080 + -0.2 779,132 + -0.4 779,199 - -0.1 779,205 - +0.4 779,205 - -1.4 779,205 - -0.2 779,215 + +0.0 779,215 + +0.7 779,216 - +0.5 779,294 + +0.3 779,294 + +0.4 779,295 - +1.3 779,341 - +0.4 779,346 - +1.3 779,346 - -1.0 779,373 - -1.4 779,432 - +0.4 779,432 - +0.0 779,512 + IAI46_03595 0.10 +1.2 779,772 + IAI46_03595 0.30 +0.0 780,091 - IAI46_03595 0.53 +0.1 780,111 - IAI46_03595 0.55 -0.2 780,141 + IAI46_03595 0.57 +0.7 780,141 + IAI46_03595 0.57 +0.5 780,141 + IAI46_03595 0.57 -0.2 780,141 + IAI46_03595 0.57 +0.4 780,142 - IAI46_03595 0.57 -0.8 780,142 - IAI46_03595 0.57 +1.9 780,145 - IAI46_03595 0.57 +0.3 780,161 - IAI46_03595 0.58 +0.2 780,161 - IAI46_03595 0.58 -0.2 780,166 + IAI46_03595 0.59 +0.2 780,166 + IAI46_03595 0.59 -0.2 780,167 - IAI46_03595 0.59 +0.4 780,167 - IAI46_03595 0.59 +0.2 780,196 + IAI46_03595 0.61 +1.0 780,196 + IAI46_03595 0.61 +1.3 780,208 + IAI46_03595 0.62 +1.8 780,208 + IAI46_03595 0.62 +1.2 780,209 - IAI46_03595 0.62 +0.3 780,209 - IAI46_03595 0.62 +0.6 780,209 - IAI46_03595 0.62 -0.2 780,248 + IAI46_03595 0.65 +1.2 780,248 + IAI46_03595 0.65 +0.6 780,249 - IAI46_03595 0.65 -0.5 780,340 + IAI46_03595 0.72 +1.3 780,340 + IAI46_03595 0.72 +0.9 780,340 + IAI46_03595 0.72 +0.4 780,340 + IAI46_03595 0.72 +0.2 780,341 - IAI46_03595 0.72 +0.8 780,341 - IAI46_03595 0.72 -0.2 780,341 - IAI46_03595 0.72 -1.6 780,341 - IAI46_03595 0.72 +0.4 780,341 - IAI46_03595 0.72 +0.0 780,341 - IAI46_03595 0.72 +0.6 780,362 - IAI46_03595 0.73 +1.3 780,362 - IAI46_03595 0.73 -0.8 780,376 - IAI46_03595 0.74 -0.3 780,377 + IAI46_03595 0.74 +0.8 780,377 + IAI46_03595 0.74 +0.5 780,378 - IAI46_03595 0.74 -0.6 780,386 + IAI46_03595 0.75 +0.4 780,387 - IAI46_03595 0.75 -1.1 780,390 - IAI46_03595 0.75 -0.9 780,393 - IAI46_03595 0.76 -1.7 780,524 + IAI46_03595 0.85 +0.1 780,525 - IAI46_03595 0.85 -0.7 780,531 - IAI46_03595 0.86 +0.9 780,555 + IAI46_03595 0.88 -0.4 780,555 + IAI46_03595 0.88 -0.7 780,555 + IAI46_03595 0.88 +0.6 780,556 - IAI46_03595 0.88 -1.4 780,556 - IAI46_03595 0.88 -1.3 780,556 - IAI46_03595 0.88 -1.1 780,644 + +0.3 780,644 + +0.3 780,721 - -0.9 780,721 - -1.3 780,813 - -2.0 780,881 + -2.5 780,881 + -0.9 780,932 + -0.8 781,044 + IAI46_03600 0.14 -1.2 781,044 + IAI46_03600 0.14 -1.6 781,044 + IAI46_03600 0.14 -2.3 781,045 - IAI46_03600 0.14 -0.2 781,045 - IAI46_03600 0.14 -2.5 781,067 + IAI46_03600 0.15 -2.2 781,271 + IAI46_03600 0.24 -1.6 781,275 + IAI46_03600 0.24 +0.1 781,275 + IAI46_03600 0.24 +0.7 781,275 + IAI46_03600 0.24 -0.8 781,276 - IAI46_03600 0.24 -0.9 781,276 - IAI46_03600 0.24 -1.6 781,276 - IAI46_03600 0.24 -2.1 781,362 + IAI46_03600 0.28 -1.6 781,363 - IAI46_03600 0.28 -1.0 781,363 - IAI46_03600 0.28 -1.6 781,363 - IAI46_03600 0.28 -1.0 781,443 - IAI46_03600 0.32 -1.1 781,479 + IAI46_03600 0.33 -1.0 781,479 + IAI46_03600 0.33 -2.7 781,479 + IAI46_03600 0.33 -2.0 781,479 + IAI46_03600 0.33 -0.8 781,479 + IAI46_03600 0.33 -2.0 781,480 - IAI46_03600 0.34 -2.2 781,480 - IAI46_03600 0.34 +0.2 781,500 + IAI46_03600 0.34 -2.0 781,500 + IAI46_03600 0.34 -3.0 781,501 - IAI46_03600 0.34 -0.8 781,501 - IAI46_03600 0.34 -2.7 781,600 - IAI46_03600 0.39 -2.6 781,622 + IAI46_03600 0.40 -0.7 781,660 - IAI46_03600 0.42 -2.4 781,660 - IAI46_03600 0.42 -1.9 781,660 - IAI46_03600 0.42 -1.2 781,705 + IAI46_03600 0.44 -2.3 781,705 + IAI46_03600 0.44 -0.1 781,705 + IAI46_03600 0.44 -1.6 781,705 + IAI46_03600 0.44 -1.8 781,705 + IAI46_03600 0.44 -1.6 781,706 - IAI46_03600 0.44 -1.4 781,708 + IAI46_03600 0.44 -2.5 781,708 + IAI46_03600 0.44 -2.1
Or see this region's nucleotide sequence