Strain Fitness in Serratia liquefaciens MT49 around IAI46_03185

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03180 and IAI46_03185 are separated by 433 nucleotidesIAI46_03185 and IAI46_03190 are separated by 470 nucleotides IAI46_03180: IAI46_03180 - FadR family transcriptional regulator, at 681,408 to 682,139 _03180 IAI46_03185: IAI46_03185 - 4-hydroxy-tetrahydrodipicolinate reductase, at 682,573 to 683,394 _03185 IAI46_03190: IAI46_03190 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 683,865 to 685,013 _03190 Position (kb) 682 683 684Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 681.573 kb on - strand, within IAI46_03180at 681.889 kb on - strand, within IAI46_03180at 681.889 kb on - strand, within IAI46_03180at 681.997 kb on - strand, within IAI46_03180at 682.155 kb on - strandat 682.155 kb on - strandat 682.159 kb on - strandat 682.159 kb on - strandat 682.177 kb on + strandat 682.179 kb on + strandat 682.179 kb on + strandat 682.179 kb on + strandat 682.179 kb on + strandat 682.179 kb on + strandat 682.180 kb on - strandat 682.182 kb on + strandat 682.182 kb on + strandat 682.182 kb on + strandat 682.182 kb on + strandat 682.183 kb on - strandat 682.183 kb on - strandat 682.183 kb on - strandat 682.183 kb on - strandat 682.187 kb on + strandat 682.187 kb on + strandat 682.188 kb on - strandat 682.276 kb on + strandat 682.276 kb on + strandat 682.276 kb on + strandat 682.277 kb on - strandat 682.280 kb on + strandat 682.332 kb on + strandat 682.395 kb on - strandat 682.423 kb on + strandat 682.423 kb on + strandat 682.432 kb on + strandat 682.444 kb on + strandat 682.480 kb on + strandat 682.488 kb on + strandat 682.488 kb on + strandat 683.427 kb on + strandat 683.547 kb on + strandat 683.548 kb on - strandat 683.558 kb on + strandat 683.559 kb on - strandat 683.559 kb on - strandat 683.559 kb on - strandat 683.573 kb on - strandat 683.636 kb on + strandat 683.669 kb on - strandat 683.680 kb on + strandat 683.681 kb on - strandat 683.804 kb on + strandat 683.805 kb on - strandat 683.937 kb on - strandat 683.963 kb on + strandat 683.963 kb on + strandat 683.964 kb on - strandat 683.980 kb on - strand, within IAI46_03190at 684.029 kb on + strand, within IAI46_03190at 684.029 kb on + strand, within IAI46_03190at 684.030 kb on - strand, within IAI46_03190at 684.030 kb on - strand, within IAI46_03190at 684.030 kb on - strand, within IAI46_03190at 684.034 kb on - strand, within IAI46_03190at 684.034 kb on - strand, within IAI46_03190at 684.034 kb on - strand, within IAI46_03190at 684.042 kb on - strand, within IAI46_03190at 684.089 kb on - strand, within IAI46_03190at 684.089 kb on - strand, within IAI46_03190at 684.351 kb on - strand, within IAI46_03190at 684.366 kb on + strand, within IAI46_03190at 684.366 kb on + strand, within IAI46_03190at 684.366 kb on + strand, within IAI46_03190at 684.367 kb on - strand, within IAI46_03190at 684.367 kb on - strand, within IAI46_03190at 684.367 kb on - strand, within IAI46_03190at 684.367 kb on - strand, within IAI46_03190

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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681,573 - IAI46_03180 0.23 -0.2
681,889 - IAI46_03180 0.66 -0.1
681,889 - IAI46_03180 0.66 -0.1
681,997 - IAI46_03180 0.80 +0.4
682,155 - +1.2
682,155 - +0.6
682,159 - +0.4
682,159 - -0.4
682,177 + +0.2
682,179 + -0.4
682,179 + -0.2
682,179 + +0.7
682,179 + +0.4
682,179 + +0.3
682,180 - +0.8
682,182 + +1.0
682,182 + -1.0
682,182 + -0.4
682,182 + +1.2
682,183 - -0.1
682,183 - -0.4
682,183 - +0.2
682,183 - -0.6
682,187 + -0.0
682,187 + +0.2
682,188 - +0.3
682,276 + +0.9
682,276 + +0.8
682,276 + -0.0
682,277 - +1.2
682,280 + -0.1
682,332 + -0.5
682,395 - +1.6
682,423 + -0.2
682,423 + +1.4
682,432 + +1.4
682,444 + -0.4
682,480 + +0.6
682,488 + +1.0
682,488 + +1.1
683,427 + -0.1
683,547 + -1.1
683,548 - +1.0
683,558 + -0.3
683,559 - -1.3
683,559 - +1.2
683,559 - +0.4
683,573 - +0.2
683,636 + -0.5
683,669 - -0.3
683,680 + -0.1
683,681 - +1.0
683,804 + -0.5
683,805 - -2.4
683,937 - -1.1
683,963 + -2.2
683,963 + -4.2
683,964 - -1.2
683,980 - IAI46_03190 0.10 -0.7
684,029 + IAI46_03190 0.14 -2.4
684,029 + IAI46_03190 0.14 -0.5
684,030 - IAI46_03190 0.14 -0.9
684,030 - IAI46_03190 0.14 -0.7
684,030 - IAI46_03190 0.14 -3.5
684,034 - IAI46_03190 0.15 -1.5
684,034 - IAI46_03190 0.15 -1.8
684,034 - IAI46_03190 0.15 -2.7
684,042 - IAI46_03190 0.15 -2.4
684,089 - IAI46_03190 0.19 -1.2
684,089 - IAI46_03190 0.19 -1.8
684,351 - IAI46_03190 0.42 -0.5
684,366 + IAI46_03190 0.44 -1.9
684,366 + IAI46_03190 0.44 -2.9
684,366 + IAI46_03190 0.44 -3.8
684,367 - IAI46_03190 0.44 -1.1
684,367 - IAI46_03190 0.44 -0.3
684,367 - IAI46_03190 0.44 -2.4
684,367 - IAI46_03190 0.44 -1.3

Or see this region's nucleotide sequence