Strain Fitness in Serratia liquefaciens MT49 around IAI46_02760

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02750 and IAI46_02755 are separated by 34 nucleotidesIAI46_02755 and IAI46_02760 are separated by 30 nucleotidesIAI46_02760 and IAI46_02765 are separated by 157 nucleotides IAI46_02750: IAI46_02750 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 591,970 to 592,773 _02750 IAI46_02755: IAI46_02755 - 4-hydroxy-2-oxoheptanedioate aldolase, at 592,808 to 593,614 _02755 IAI46_02760: IAI46_02760 - 4-hydroxyphenylacetate permease, at 593,645 to 594,967 _02760 IAI46_02765: IAI46_02765 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 595,125 to 596,033 _02765 Position (kb) 593 594 595Strain fitness (log2 ratio) -2 -1 0 1at 592.649 kb on + strand, within IAI46_02750at 592.650 kb on - strand, within IAI46_02750at 592.650 kb on - strand, within IAI46_02750at 592.898 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 593.091 kb on + strand, within IAI46_02755at 593.091 kb on + strand, within IAI46_02755at 593.167 kb on - strand, within IAI46_02755at 593.253 kb on + strand, within IAI46_02755at 593.253 kb on + strand, within IAI46_02755at 593.254 kb on - strand, within IAI46_02755at 593.328 kb on + strand, within IAI46_02755at 593.329 kb on - strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.416 kb on + strand, within IAI46_02755at 593.416 kb on + strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.487 kb on - strand, within IAI46_02755at 593.518 kb on - strand, within IAI46_02755at 593.573 kb on - strandat 593.592 kb on + strandat 593.592 kb on + strandat 593.612 kb on + strandat 593.612 kb on + strandat 593.612 kb on + strandat 593.613 kb on - strandat 593.632 kb on + strandat 593.692 kb on + strandat 593.693 kb on - strandat 593.693 kb on - strandat 593.749 kb on + strandat 593.750 kb on - strandat 593.876 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.885 kb on + strand, within IAI46_02760at 593.886 kb on - strand, within IAI46_02760at 593.886 kb on - strand, within IAI46_02760at 593.911 kb on + strand, within IAI46_02760at 593.911 kb on + strand, within IAI46_02760at 594.017 kb on + strand, within IAI46_02760at 594.018 kb on - strand, within IAI46_02760at 594.018 kb on - strand, within IAI46_02760at 594.021 kb on + strand, within IAI46_02760at 594.021 kb on + strand, within IAI46_02760at 594.021 kb on + strand, within IAI46_02760at 594.036 kb on + strand, within IAI46_02760at 594.036 kb on + strand, within IAI46_02760at 594.037 kb on - strand, within IAI46_02760at 594.077 kb on + strand, within IAI46_02760at 594.077 kb on + strand, within IAI46_02760at 594.077 kb on + strand, within IAI46_02760at 594.078 kb on - strand, within IAI46_02760at 594.078 kb on - strand, within IAI46_02760at 594.087 kb on - strand, within IAI46_02760at 594.087 kb on - strand, within IAI46_02760at 594.087 kb on - strand, within IAI46_02760at 594.130 kb on + strand, within IAI46_02760at 594.130 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.182 kb on - strand, within IAI46_02760at 594.182 kb on - strand, within IAI46_02760at 594.292 kb on + strand, within IAI46_02760at 594.292 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.459 kb on - strand, within IAI46_02760at 594.459 kb on - strand, within IAI46_02760at 594.461 kb on - strand, within IAI46_02760at 594.470 kb on + strand, within IAI46_02760at 594.470 kb on + strand, within IAI46_02760at 594.471 kb on - strand, within IAI46_02760at 594.471 kb on - strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.506 kb on - strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.565 kb on + strand, within IAI46_02760at 594.566 kb on - strand, within IAI46_02760at 594.593 kb on - strand, within IAI46_02760at 594.619 kb on + strand, within IAI46_02760at 594.619 kb on + strand, within IAI46_02760at 594.620 kb on - strand, within IAI46_02760at 594.655 kb on + strand, within IAI46_02760at 594.655 kb on + strand, within IAI46_02760at 594.668 kb on + strand, within IAI46_02760at 594.847 kb on + strandat 594.848 kb on - strandat 594.965 kb on + strandat 594.966 kb on - strandat 594.966 kb on - strandat 594.975 kb on - strandat 594.977 kb on + strandat 594.978 kb on - strandat 595.025 kb on + strandat 595.026 kb on - strandat 595.026 kb on - strandat 595.029 kb on + strandat 595.029 kb on + strandat 595.030 kb on - strandat 595.038 kb on + strandat 595.105 kb on + strandat 595.106 kb on - strandat 595.106 kb on - strandat 595.172 kb on + strandat 595.173 kb on - strandat 595.173 kb on - strandat 595.186 kb on - strandat 595.186 kb on - strandat 595.218 kb on + strand, within IAI46_02765at 595.218 kb on + strand, within IAI46_02765at 595.219 kb on - strand, within IAI46_02765at 595.219 kb on - strand, within IAI46_02765at 595.318 kb on + strand, within IAI46_02765at 595.319 kb on - strand, within IAI46_02765at 595.344 kb on + strand, within IAI46_02765at 595.344 kb on + strand, within IAI46_02765at 595.345 kb on - strand, within IAI46_02765at 595.388 kb on - strand, within IAI46_02765at 595.556 kb on + strand, within IAI46_02765at 595.600 kb on + strand, within IAI46_02765at 595.647 kb on - strand, within IAI46_02765at 595.647 kb on - strand, within IAI46_02765at 595.664 kb on + strand, within IAI46_02765at 595.664 kb on + strand, within IAI46_02765at 595.776 kb on + strand, within IAI46_02765at 595.777 kb on - strand, within IAI46_02765at 595.897 kb on + strand, within IAI46_02765at 595.911 kb on - strand, within IAI46_02765at 595.944 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
592,649 + IAI46_02750 0.84 +0.0
592,650 - IAI46_02750 0.85 -0.4
592,650 - IAI46_02750 0.85 +0.7
592,898 + IAI46_02755 0.11 +0.6
592,971 + IAI46_02755 0.20 -2.4
592,971 + IAI46_02755 0.20 -0.5
592,971 + IAI46_02755 0.20 -1.0
592,972 - IAI46_02755 0.20 +0.1
592,972 - IAI46_02755 0.20 -0.7
592,972 - IAI46_02755 0.20 -0.9
593,091 + IAI46_02755 0.35 -0.1
593,091 + IAI46_02755 0.35 +1.0
593,167 - IAI46_02755 0.44 -0.1
593,253 + IAI46_02755 0.55 +0.4
593,253 + IAI46_02755 0.55 +0.2
593,254 - IAI46_02755 0.55 +0.4
593,328 + IAI46_02755 0.64 -0.5
593,329 - IAI46_02755 0.65 -0.7
593,332 + IAI46_02755 0.65 -0.8
593,332 + IAI46_02755 0.65 +0.4
593,332 + IAI46_02755 0.65 -0.4
593,416 + IAI46_02755 0.75 +0.1
593,416 + IAI46_02755 0.75 -0.2
593,417 - IAI46_02755 0.75 +0.7
593,417 - IAI46_02755 0.75 +0.1
593,417 - IAI46_02755 0.75 -0.5
593,486 + IAI46_02755 0.84 +0.7
593,486 + IAI46_02755 0.84 -0.4
593,486 + IAI46_02755 0.84 -0.7
593,487 - IAI46_02755 0.84 +0.3
593,518 - IAI46_02755 0.88 +0.2
593,573 - -0.3
593,592 + -0.0
593,592 + +0.1
593,612 + -0.2
593,612 + +1.0
593,612 + -0.7
593,613 - -0.1
593,632 + +0.5
593,692 + -1.9
593,693 - -0.0
593,693 - -0.8
593,749 + +1.0
593,750 - -0.8
593,876 + IAI46_02760 0.17 -0.8
593,885 + IAI46_02760 0.18 -0.1
593,885 + IAI46_02760 0.18 +0.3
593,885 + IAI46_02760 0.18 +0.9
593,885 + IAI46_02760 0.18 +0.6
593,885 + IAI46_02760 0.18 -0.2
593,885 + IAI46_02760 0.18 +0.3
593,886 - IAI46_02760 0.18 -0.1
593,886 - IAI46_02760 0.18 -1.5
593,911 + IAI46_02760 0.20 -0.2
593,911 + IAI46_02760 0.20 +0.5
594,017 + IAI46_02760 0.28 +0.0
594,018 - IAI46_02760 0.28 +0.0
594,018 - IAI46_02760 0.28 -0.2
594,021 + IAI46_02760 0.28 +0.6
594,021 + IAI46_02760 0.28 -0.8
594,021 + IAI46_02760 0.28 +0.7
594,036 + IAI46_02760 0.30 +0.1
594,036 + IAI46_02760 0.30 +0.1
594,037 - IAI46_02760 0.30 -0.4
594,077 + IAI46_02760 0.33 -0.4
594,077 + IAI46_02760 0.33 -0.1
594,077 + IAI46_02760 0.33 +0.8
594,078 - IAI46_02760 0.33 -0.3
594,078 - IAI46_02760 0.33 -0.6
594,087 - IAI46_02760 0.33 +0.1
594,087 - IAI46_02760 0.33 +0.5
594,087 - IAI46_02760 0.33 +1.0
594,130 + IAI46_02760 0.37 +0.1
594,130 + IAI46_02760 0.37 +1.1
594,181 + IAI46_02760 0.41 +0.0
594,181 + IAI46_02760 0.41 -0.3
594,181 + IAI46_02760 0.41 -1.1
594,181 + IAI46_02760 0.41 +0.1
594,181 + IAI46_02760 0.41 +1.5
594,182 - IAI46_02760 0.41 -0.1
594,182 - IAI46_02760 0.41 +0.3
594,292 + IAI46_02760 0.49 +1.1
594,292 + IAI46_02760 0.49 +0.4
594,458 + IAI46_02760 0.61 +0.2
594,458 + IAI46_02760 0.61 -0.2
594,458 + IAI46_02760 0.61 -0.2
594,458 + IAI46_02760 0.61 +0.2
594,458 + IAI46_02760 0.61 +0.5
594,458 + IAI46_02760 0.61 -1.0
594,459 - IAI46_02760 0.62 +0.4
594,459 - IAI46_02760 0.62 -0.9
594,461 - IAI46_02760 0.62 +0.2
594,470 + IAI46_02760 0.62 -0.1
594,470 + IAI46_02760 0.62 +0.1
594,471 - IAI46_02760 0.62 +0.7
594,471 - IAI46_02760 0.62 +0.0
594,505 + IAI46_02760 0.65 +0.7
594,505 + IAI46_02760 0.65 -0.2
594,505 + IAI46_02760 0.65 -0.1
594,506 - IAI46_02760 0.65 +0.1
594,547 + IAI46_02760 0.68 +0.9
594,547 + IAI46_02760 0.68 -1.1
594,547 + IAI46_02760 0.68 +0.6
594,565 + IAI46_02760 0.70 +0.5
594,566 - IAI46_02760 0.70 -0.4
594,593 - IAI46_02760 0.72 +0.7
594,619 + IAI46_02760 0.74 -0.4
594,619 + IAI46_02760 0.74 -0.7
594,620 - IAI46_02760 0.74 -0.2
594,655 + IAI46_02760 0.76 -0.4
594,655 + IAI46_02760 0.76 +0.1
594,668 + IAI46_02760 0.77 -0.5
594,847 + +0.6
594,848 - +0.5
594,965 + +0.5
594,966 - -1.4
594,966 - -1.3
594,975 - +1.2
594,977 + -0.2
594,978 - +0.3
595,025 + -1.1
595,026 - +1.1
595,026 - -0.1
595,029 + -0.8
595,029 + -0.2
595,030 - -0.1
595,038 + -0.5
595,105 + +0.4
595,106 - -0.7
595,106 - -0.2
595,172 + -0.6
595,173 - +1.2
595,173 - -1.3
595,186 - -0.4
595,186 - +0.6
595,218 + IAI46_02765 0.10 -1.3
595,218 + IAI46_02765 0.10 +0.6
595,219 - IAI46_02765 0.10 -0.5
595,219 - IAI46_02765 0.10 +0.9
595,318 + IAI46_02765 0.21 -0.7
595,319 - IAI46_02765 0.21 +0.2
595,344 + IAI46_02765 0.24 +0.5
595,344 + IAI46_02765 0.24 +0.2
595,345 - IAI46_02765 0.24 -0.2
595,388 - IAI46_02765 0.29 +0.8
595,556 + IAI46_02765 0.47 +0.9
595,600 + IAI46_02765 0.52 -0.2
595,647 - IAI46_02765 0.57 -0.9
595,647 - IAI46_02765 0.57 -0.1
595,664 + IAI46_02765 0.59 -0.4
595,664 + IAI46_02765 0.59 +1.5
595,776 + IAI46_02765 0.72 +0.3
595,777 - IAI46_02765 0.72 -0.7
595,897 + IAI46_02765 0.85 +1.7
595,911 - IAI46_02765 0.86 +0.8
595,944 - -0.1

Or see this region's nucleotide sequence