Strain Fitness in Serratia liquefaciens MT49 around IAI46_02665

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02660 and IAI46_02665 are separated by 102 nucleotidesIAI46_02665 and IAI46_02670 are separated by 21 nucleotidesIAI46_02670 and IAI46_02675 are separated by 40 nucleotides IAI46_02660: IAI46_02660 - response regulator transcription factor, at 575,088 to 575,846 _02660 IAI46_02665: IAI46_02665 - FAD-binding oxidoreductase, at 575,949 to 577,250 _02665 IAI46_02670: IAI46_02670 - DUF861 domain-containing protein, at 577,272 to 577,637 _02670 IAI46_02675: IAI46_02675 - alpha/beta hydrolase, at 577,678 to 578,484 _02675 Position (kb) 575 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 574.970 kb on + strandat 574.977 kb on + strandat 575.005 kb on + strandat 575.005 kb on + strandat 575.005 kb on + strandat 575.006 kb on - strandat 575.006 kb on - strandat 575.022 kb on - strandat 575.066 kb on + strandat 575.094 kb on - strandat 575.149 kb on - strandat 575.193 kb on - strand, within IAI46_02660at 575.205 kb on + strand, within IAI46_02660at 575.283 kb on + strand, within IAI46_02660at 575.298 kb on + strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.390 kb on + strand, within IAI46_02660at 575.391 kb on - strand, within IAI46_02660at 575.397 kb on + strand, within IAI46_02660at 575.397 kb on + strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.400 kb on + strand, within IAI46_02660at 575.674 kb on + strand, within IAI46_02660at 575.769 kb on + strand, within IAI46_02660at 575.769 kb on + strand, within IAI46_02660at 575.770 kb on - strand, within IAI46_02660at 575.875 kb on - strandat 575.910 kb on - strandat 575.921 kb on - strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.928 kb on - strandat 575.928 kb on - strandat 575.957 kb on + strandat 575.957 kb on + strandat 575.957 kb on + strandat 575.957 kb on + strandat 575.958 kb on - strandat 575.960 kb on + strandat 575.961 kb on - strandat 575.961 kb on - strandat 575.971 kb on + strandat 575.976 kb on + strandat 575.977 kb on - strandat 575.977 kb on - strandat 575.979 kb on + strandat 575.980 kb on - strandat 576.136 kb on - strand, within IAI46_02665at 576.136 kb on - strand, within IAI46_02665at 576.298 kb on - strand, within IAI46_02665at 576.423 kb on + strand, within IAI46_02665at 576.423 kb on + strand, within IAI46_02665at 576.424 kb on - strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.466 kb on - strand, within IAI46_02665at 576.468 kb on - strand, within IAI46_02665at 576.468 kb on - strand, within IAI46_02665at 576.468 kb on - strand, within IAI46_02665at 576.594 kb on + strand, within IAI46_02665at 576.635 kb on - strand, within IAI46_02665at 576.635 kb on - strand, within IAI46_02665at 576.635 kb on - strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.718 kb on - strand, within IAI46_02665at 576.789 kb on + strand, within IAI46_02665at 576.789 kb on + strand, within IAI46_02665at 576.817 kb on - strand, within IAI46_02665at 576.894 kb on - strand, within IAI46_02665at 577.050 kb on + strand, within IAI46_02665at 577.079 kb on + strand, within IAI46_02665at 577.080 kb on - strand, within IAI46_02665at 577.128 kb on + strandat 577.160 kb on + strandat 577.160 kb on + strandat 577.160 kb on + strandat 577.161 kb on - strandat 577.282 kb on + strandat 577.282 kb on + strandat 577.283 kb on - strandat 577.283 kb on - strandat 577.289 kb on + strandat 577.289 kb on + strandat 577.290 kb on - strandat 577.490 kb on + strand, within IAI46_02670at 577.490 kb on + strand, within IAI46_02670at 577.490 kb on + strand, within IAI46_02670at 577.534 kb on - strand, within IAI46_02670at 577.534 kb on - strand, within IAI46_02670at 577.577 kb on - strand, within IAI46_02670at 577.614 kb on + strandat 577.642 kb on + strandat 577.680 kb on - strandat 577.698 kb on + strandat 577.717 kb on + strandat 577.717 kb on + strandat 577.718 kb on - strandat 577.718 kb on - strandat 577.720 kb on + strandat 577.720 kb on + strandat 577.720 kb on + strandat 577.721 kb on - strandat 577.721 kb on - strandat 577.858 kb on + strand, within IAI46_02675at 577.859 kb on - strand, within IAI46_02675at 577.870 kb on - strand, within IAI46_02675at 578.052 kb on + strand, within IAI46_02675at 578.052 kb on + strand, within IAI46_02675at 578.052 kb on + strand, within IAI46_02675at 578.053 kb on - strand, within IAI46_02675at 578.138 kb on + strand, within IAI46_02675at 578.221 kb on + strand, within IAI46_02675at 578.222 kb on - strand, within IAI46_02675at 578.229 kb on + strand, within IAI46_02675at 578.230 kb on - strand, within IAI46_02675

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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574,970 + -0.3
574,977 + -0.7
575,005 + +0.2
575,005 + +0.5
575,005 + -0.2
575,006 - +0.5
575,006 - +0.2
575,022 - +0.6
575,066 + +0.3
575,094 - +1.1
575,149 - +0.1
575,193 - IAI46_02660 0.14 +0.6
575,205 + IAI46_02660 0.15 -0.7
575,283 + IAI46_02660 0.26 +0.7
575,298 + IAI46_02660 0.28 +0.7
575,299 - IAI46_02660 0.28 +0.5
575,299 - IAI46_02660 0.28 -0.1
575,299 - IAI46_02660 0.28 +2.4
575,386 - IAI46_02660 0.39 -0.3
575,386 - IAI46_02660 0.39 -0.1
575,386 - IAI46_02660 0.39 +0.3
575,386 - IAI46_02660 0.39 +0.1
575,386 - IAI46_02660 0.39 +0.6
575,390 + IAI46_02660 0.40 -0.1
575,391 - IAI46_02660 0.40 +1.4
575,397 + IAI46_02660 0.41 +0.4
575,397 + IAI46_02660 0.41 +0.6
575,398 - IAI46_02660 0.41 -0.3
575,398 - IAI46_02660 0.41 +1.0
575,398 - IAI46_02660 0.41 -0.0
575,398 - IAI46_02660 0.41 -0.2
575,400 + IAI46_02660 0.41 -1.8
575,674 + IAI46_02660 0.77 +0.6
575,769 + IAI46_02660 0.90 +0.6
575,769 + IAI46_02660 0.90 +0.5
575,770 - IAI46_02660 0.90 +0.4
575,875 - -0.4
575,910 - -0.8
575,921 - -0.6
575,927 + -0.3
575,927 + +0.9
575,927 + +0.2
575,927 + -0.4
575,927 + +0.8
575,927 + +0.8
575,928 - -0.1
575,928 - +1.0
575,957 + -0.3
575,957 + +0.4
575,957 + +0.0
575,957 + +0.9
575,958 - +0.5
575,960 + +0.7
575,961 - +1.1
575,961 - -0.3
575,971 + +1.1
575,976 + +0.3
575,977 - +0.6
575,977 - +0.2
575,979 + +0.2
575,980 - +0.0
576,136 - IAI46_02665 0.14 -0.2
576,136 - IAI46_02665 0.14 -0.2
576,298 - IAI46_02665 0.27 -0.3
576,423 + IAI46_02665 0.36 -0.3
576,423 + IAI46_02665 0.36 -0.4
576,424 - IAI46_02665 0.36 -0.2
576,465 + IAI46_02665 0.40 +0.6
576,465 + IAI46_02665 0.40 -0.4
576,465 + IAI46_02665 0.40 +0.5
576,465 + IAI46_02665 0.40 +0.3
576,465 + IAI46_02665 0.40 -0.7
576,465 + IAI46_02665 0.40 -0.3
576,466 - IAI46_02665 0.40 +0.5
576,468 - IAI46_02665 0.40 -1.7
576,468 - IAI46_02665 0.40 -0.2
576,468 - IAI46_02665 0.40 +0.1
576,594 + IAI46_02665 0.50 -0.3
576,635 - IAI46_02665 0.53 +0.3
576,635 - IAI46_02665 0.53 +0.1
576,635 - IAI46_02665 0.53 -0.1
576,713 + IAI46_02665 0.59 +0.4
576,713 + IAI46_02665 0.59 +1.5
576,713 + IAI46_02665 0.59 -0.5
576,713 + IAI46_02665 0.59 +0.6
576,713 + IAI46_02665 0.59 -1.6
576,713 + IAI46_02665 0.59 +0.4
576,713 + IAI46_02665 0.59 -0.1
576,714 - IAI46_02665 0.59 -0.1
576,714 - IAI46_02665 0.59 +0.2
576,714 - IAI46_02665 0.59 -0.3
576,718 - IAI46_02665 0.59 -0.0
576,789 + IAI46_02665 0.65 -0.3
576,789 + IAI46_02665 0.65 -0.4
576,817 - IAI46_02665 0.67 +0.9
576,894 - IAI46_02665 0.73 -0.0
577,050 + IAI46_02665 0.85 +0.2
577,079 + IAI46_02665 0.87 -2.9
577,080 - IAI46_02665 0.87 +1.4
577,128 + -0.1
577,160 + +0.6
577,160 + -0.6
577,160 + -0.1
577,161 - -0.1
577,282 + -0.6
577,282 + +0.8
577,283 - +0.4
577,283 - -0.1
577,289 + +1.1
577,289 + +0.4
577,290 - +0.1
577,490 + IAI46_02670 0.60 -1.1
577,490 + IAI46_02670 0.60 +0.3
577,490 + IAI46_02670 0.60 +0.2
577,534 - IAI46_02670 0.72 -0.4
577,534 - IAI46_02670 0.72 +0.4
577,577 - IAI46_02670 0.83 -0.9
577,614 + -0.2
577,642 + -1.6
577,680 - -0.9
577,698 + +0.1
577,717 + +0.2
577,717 + -0.1
577,718 - +1.8
577,718 - -0.3
577,720 + +0.1
577,720 + -0.4
577,720 + +0.3
577,721 - +0.1
577,721 - +0.8
577,858 + IAI46_02675 0.22 -0.1
577,859 - IAI46_02675 0.22 +0.1
577,870 - IAI46_02675 0.24 -1.2
578,052 + IAI46_02675 0.46 -0.3
578,052 + IAI46_02675 0.46 +0.5
578,052 + IAI46_02675 0.46 -0.0
578,053 - IAI46_02675 0.46 +0.4
578,138 + IAI46_02675 0.57 +1.0
578,221 + IAI46_02675 0.67 -0.6
578,222 - IAI46_02675 0.67 -0.1
578,229 + IAI46_02675 0.68 -0.4
578,230 - IAI46_02675 0.68 -1.5

Or see this region's nucleotide sequence