Strain Fitness in Serratia liquefaciens MT49 around IAI46_02635

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02630 and IAI46_02635 are separated by 2 nucleotidesIAI46_02635 and IAI46_02640 are separated by 159 nucleotides IAI46_02630: IAI46_02630 - P1 family peptidase, at 566,860 to 567,966 _02630 IAI46_02635: IAI46_02635 - APC family permease, at 567,969 to 569,345 _02635 IAI46_02640: IAI46_02640 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 569,505 to 571,013 _02640 Position (kb) 567 568 569 570Strain fitness (log2 ratio) -2 -1 0 1at 566.971 kb on - strand, within IAI46_02630at 567.020 kb on + strand, within IAI46_02630at 567.021 kb on - strand, within IAI46_02630at 567.052 kb on - strand, within IAI46_02630at 567.052 kb on - strand, within IAI46_02630at 567.052 kb on - strand, within IAI46_02630at 567.071 kb on + strand, within IAI46_02630at 567.071 kb on + strand, within IAI46_02630at 567.071 kb on + strand, within IAI46_02630at 567.288 kb on + strand, within IAI46_02630at 567.288 kb on + strand, within IAI46_02630at 567.288 kb on + strand, within IAI46_02630at 567.288 kb on + strand, within IAI46_02630at 567.289 kb on - strand, within IAI46_02630at 567.577 kb on + strand, within IAI46_02630at 567.577 kb on + strand, within IAI46_02630at 567.589 kb on - strand, within IAI46_02630at 567.589 kb on - strand, within IAI46_02630at 567.596 kb on + strand, within IAI46_02630at 567.597 kb on - strand, within IAI46_02630at 567.597 kb on - strand, within IAI46_02630at 567.971 kb on - strandat 568.022 kb on + strandat 568.022 kb on + strandat 568.023 kb on - strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.025 kb on - strandat 568.025 kb on - strandat 568.025 kb on - strandat 568.064 kb on + strandat 568.065 kb on - strandat 568.065 kb on - strandat 568.065 kb on - strandat 568.068 kb on - strandat 568.068 kb on - strandat 568.111 kb on + strand, within IAI46_02635at 568.111 kb on + strand, within IAI46_02635at 568.111 kb on + strand, within IAI46_02635at 568.111 kb on + strand, within IAI46_02635at 568.112 kb on - strand, within IAI46_02635at 568.112 kb on - strand, within IAI46_02635at 568.112 kb on - strand, within IAI46_02635at 568.182 kb on + strand, within IAI46_02635at 568.182 kb on + strand, within IAI46_02635at 568.225 kb on + strand, within IAI46_02635at 568.225 kb on + strand, within IAI46_02635at 568.225 kb on + strand, within IAI46_02635at 568.251 kb on - strand, within IAI46_02635at 568.422 kb on - strand, within IAI46_02635at 568.466 kb on - strand, within IAI46_02635at 568.523 kb on - strand, within IAI46_02635at 568.523 kb on - strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.706 kb on - strand, within IAI46_02635at 568.779 kb on + strand, within IAI46_02635at 568.779 kb on + strand, within IAI46_02635at 568.780 kb on - strand, within IAI46_02635at 568.780 kb on - strand, within IAI46_02635at 568.958 kb on + strand, within IAI46_02635at 568.996 kb on + strand, within IAI46_02635at 568.997 kb on - strand, within IAI46_02635at 569.059 kb on + strand, within IAI46_02635at 569.060 kb on - strand, within IAI46_02635at 569.099 kb on + strand, within IAI46_02635at 569.100 kb on - strand, within IAI46_02635at 569.100 kb on - strand, within IAI46_02635at 569.107 kb on + strand, within IAI46_02635at 569.107 kb on + strand, within IAI46_02635at 569.150 kb on - strand, within IAI46_02635at 569.162 kb on + strand, within IAI46_02635at 569.162 kb on + strand, within IAI46_02635at 569.199 kb on - strand, within IAI46_02635at 569.241 kb on - strandat 569.241 kb on - strandat 569.374 kb on + strandat 569.375 kb on - strandat 569.399 kb on + strandat 569.399 kb on + strandat 569.400 kb on - strandat 569.437 kb on + strandat 569.437 kb on + strandat 569.438 kb on - strandat 569.495 kb on + strandat 569.496 kb on - strandat 569.496 kb on - strandat 569.507 kb on - strandat 569.617 kb on + strandat 569.668 kb on + strand, within IAI46_02640at 569.669 kb on - strand, within IAI46_02640at 569.708 kb on + strand, within IAI46_02640at 569.708 kb on + strand, within IAI46_02640at 569.720 kb on + strand, within IAI46_02640at 569.720 kb on + strand, within IAI46_02640at 569.721 kb on - strand, within IAI46_02640at 569.721 kb on - strand, within IAI46_02640at 569.721 kb on - strand, within IAI46_02640at 569.782 kb on + strand, within IAI46_02640at 569.797 kb on - strand, within IAI46_02640at 569.920 kb on + strand, within IAI46_02640at 569.920 kb on + strand, within IAI46_02640at 569.921 kb on - strand, within IAI46_02640at 569.984 kb on + strand, within IAI46_02640at 570.013 kb on + strand, within IAI46_02640at 570.032 kb on - strand, within IAI46_02640at 570.319 kb on + strand, within IAI46_02640at 570.319 kb on + strand, within IAI46_02640at 570.319 kb on + strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.341 kb on + strand, within IAI46_02640

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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566,971 - IAI46_02630 0.10 +1.1
567,020 + IAI46_02630 0.14 +0.7
567,021 - IAI46_02630 0.15 +0.6
567,052 - IAI46_02630 0.17 -1.4
567,052 - IAI46_02630 0.17 -1.3
567,052 - IAI46_02630 0.17 +0.8
567,071 + IAI46_02630 0.19 +0.2
567,071 + IAI46_02630 0.19 -1.0
567,071 + IAI46_02630 0.19 +0.5
567,288 + IAI46_02630 0.39 +0.4
567,288 + IAI46_02630 0.39 +1.6
567,288 + IAI46_02630 0.39 +0.4
567,288 + IAI46_02630 0.39 -0.9
567,289 - IAI46_02630 0.39 -0.9
567,577 + IAI46_02630 0.65 -0.7
567,577 + IAI46_02630 0.65 +0.7
567,589 - IAI46_02630 0.66 -0.7
567,589 - IAI46_02630 0.66 -0.1
567,596 + IAI46_02630 0.66 +0.4
567,597 - IAI46_02630 0.67 +0.7
567,597 - IAI46_02630 0.67 +0.6
567,971 - -0.7
568,022 + -0.5
568,022 + +0.4
568,023 - +0.5
568,024 + -0.1
568,024 + +0.7
568,024 + -1.6
568,024 + +0.4
568,024 + -0.1
568,024 + -0.1
568,024 + -1.4
568,024 + +0.6
568,024 + +1.0
568,025 - +0.2
568,025 - -0.0
568,025 - +0.4
568,064 + +0.1
568,065 - +0.5
568,065 - +0.1
568,065 - -1.1
568,068 - +0.5
568,068 - +0.2
568,111 + IAI46_02635 0.10 +0.3
568,111 + IAI46_02635 0.10 +0.2
568,111 + IAI46_02635 0.10 -0.1
568,111 + IAI46_02635 0.10 -0.1
568,112 - IAI46_02635 0.10 +0.2
568,112 - IAI46_02635 0.10 +0.4
568,112 - IAI46_02635 0.10 +0.1
568,182 + IAI46_02635 0.15 +1.6
568,182 + IAI46_02635 0.15 +0.1
568,225 + IAI46_02635 0.19 +0.1
568,225 + IAI46_02635 0.19 +1.1
568,225 + IAI46_02635 0.19 +0.6
568,251 - IAI46_02635 0.20 -0.1
568,422 - IAI46_02635 0.33 +1.1
568,466 - IAI46_02635 0.36 +0.1
568,523 - IAI46_02635 0.40 -0.4
568,523 - IAI46_02635 0.40 -0.5
568,681 + IAI46_02635 0.52 -0.1
568,681 + IAI46_02635 0.52 +0.4
568,681 + IAI46_02635 0.52 -0.8
568,681 + IAI46_02635 0.52 -0.7
568,681 + IAI46_02635 0.52 +0.3
568,682 - IAI46_02635 0.52 -0.3
568,682 - IAI46_02635 0.52 +0.1
568,682 - IAI46_02635 0.52 -0.9
568,706 - IAI46_02635 0.54 -0.3
568,779 + IAI46_02635 0.59 +0.1
568,779 + IAI46_02635 0.59 +0.8
568,780 - IAI46_02635 0.59 -0.1
568,780 - IAI46_02635 0.59 +0.9
568,958 + IAI46_02635 0.72 +0.7
568,996 + IAI46_02635 0.75 +0.5
568,997 - IAI46_02635 0.75 -0.3
569,059 + IAI46_02635 0.79 +1.2
569,060 - IAI46_02635 0.79 +0.4
569,099 + IAI46_02635 0.82 -0.5
569,100 - IAI46_02635 0.82 +1.1
569,100 - IAI46_02635 0.82 +0.0
569,107 + IAI46_02635 0.83 -0.2
569,107 + IAI46_02635 0.83 -0.2
569,150 - IAI46_02635 0.86 -0.1
569,162 + IAI46_02635 0.87 -0.3
569,162 + IAI46_02635 0.87 +0.5
569,199 - IAI46_02635 0.89 -0.5
569,241 - +0.8
569,241 - +1.2
569,374 + +0.3
569,375 - -0.6
569,399 + +0.1
569,399 + +0.1
569,400 - +0.4
569,437 + -0.4
569,437 + +1.0
569,438 - +1.2
569,495 + +0.1
569,496 - -0.0
569,496 - -1.9
569,507 - -0.4
569,617 + -0.1
569,668 + IAI46_02640 0.11 +1.4
569,669 - IAI46_02640 0.11 +0.5
569,708 + IAI46_02640 0.13 -1.9
569,708 + IAI46_02640 0.13 -0.0
569,720 + IAI46_02640 0.14 +1.3
569,720 + IAI46_02640 0.14 -0.5
569,721 - IAI46_02640 0.14 +0.2
569,721 - IAI46_02640 0.14 -0.5
569,721 - IAI46_02640 0.14 +0.0
569,782 + IAI46_02640 0.18 +0.9
569,797 - IAI46_02640 0.19 +0.2
569,920 + IAI46_02640 0.28 +0.4
569,920 + IAI46_02640 0.28 -0.6
569,921 - IAI46_02640 0.28 +0.7
569,984 + IAI46_02640 0.32 -0.3
570,013 + IAI46_02640 0.34 -0.2
570,032 - IAI46_02640 0.35 +0.4
570,319 + IAI46_02640 0.54 +1.3
570,319 + IAI46_02640 0.54 +0.5
570,319 + IAI46_02640 0.54 -0.4
570,320 - IAI46_02640 0.54 -0.2
570,320 - IAI46_02640 0.54 -0.3
570,320 - IAI46_02640 0.54 +0.4
570,320 - IAI46_02640 0.54 -0.0
570,320 - IAI46_02640 0.54 +0.4
570,341 + IAI46_02640 0.55 +0.1

Or see this region's nucleotide sequence