Strain Fitness in Serratia liquefaciens MT49 around IAI46_02220

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02215 and IAI46_02220 are separated by 300 nucleotidesIAI46_02220 and IAI46_02225 are separated by 417 nucleotides IAI46_02215: IAI46_02215 - tail fiber domain-containing protein, at 465,540 to 466,679 _02215 IAI46_02220: IAI46_02220 - HTH-type transcriptional regulator TreR, at 466,980 to 467,927 _02220 IAI46_02225: IAI46_02225 - magnesium-translocating P-type ATPase, at 468,345 to 471,053 _02225 Position (kb) 466 467 468Strain fitness (log2 ratio) -2 -1 0 1at 465.989 kb on - strand, within IAI46_02215at 465.994 kb on + strand, within IAI46_02215at 465.994 kb on + strand, within IAI46_02215at 465.997 kb on - strand, within IAI46_02215at 465.997 kb on - strand, within IAI46_02215at 466.026 kb on + strand, within IAI46_02215at 466.026 kb on + strand, within IAI46_02215at 466.027 kb on - strand, within IAI46_02215at 466.027 kb on - strand, within IAI46_02215at 466.027 kb on - strand, within IAI46_02215at 466.027 kb on - strand, within IAI46_02215at 466.027 kb on - strand, within IAI46_02215at 466.058 kb on + strand, within IAI46_02215at 466.058 kb on + strand, within IAI46_02215at 466.058 kb on + strand, within IAI46_02215at 466.058 kb on + strand, within IAI46_02215at 466.058 kb on + strand, within IAI46_02215at 466.059 kb on - strand, within IAI46_02215at 466.059 kb on - strand, within IAI46_02215at 466.059 kb on - strand, within IAI46_02215at 466.065 kb on - strand, within IAI46_02215at 466.074 kb on - strand, within IAI46_02215at 466.116 kb on + strand, within IAI46_02215at 466.156 kb on - strand, within IAI46_02215at 466.186 kb on + strand, within IAI46_02215at 466.186 kb on + strand, within IAI46_02215at 466.291 kb on + strand, within IAI46_02215at 466.291 kb on + strand, within IAI46_02215at 466.292 kb on - strand, within IAI46_02215at 466.292 kb on - strand, within IAI46_02215at 466.294 kb on + strand, within IAI46_02215at 466.294 kb on + strand, within IAI46_02215at 466.379 kb on + strand, within IAI46_02215at 466.379 kb on + strand, within IAI46_02215at 466.379 kb on + strand, within IAI46_02215at 466.380 kb on - strand, within IAI46_02215at 466.562 kb on + strand, within IAI46_02215at 466.562 kb on + strand, within IAI46_02215at 466.562 kb on + strand, within IAI46_02215at 466.563 kb on - strand, within IAI46_02215at 466.563 kb on - strand, within IAI46_02215at 466.563 kb on - strand, within IAI46_02215at 466.566 kb on + strandat 466.567 kb on - strandat 466.684 kb on - strandat 466.684 kb on - strandat 466.684 kb on - strandat 466.684 kb on - strandat 466.684 kb on - strandat 466.767 kb on + strandat 466.767 kb on + strandat 466.767 kb on + strandat 466.768 kb on - strandat 466.768 kb on - strandat 466.768 kb on - strandat 466.768 kb on - strandat 466.815 kb on + strandat 466.893 kb on + strandat 466.935 kb on + strandat 466.936 kb on - strandat 467.117 kb on + strand, within IAI46_02220at 467.117 kb on + strand, within IAI46_02220at 467.160 kb on - strand, within IAI46_02220at 467.162 kb on + strand, within IAI46_02220at 467.163 kb on - strand, within IAI46_02220at 467.163 kb on - strand, within IAI46_02220at 467.180 kb on - strand, within IAI46_02220at 467.180 kb on - strand, within IAI46_02220at 467.180 kb on - strand, within IAI46_02220at 467.180 kb on - strand, within IAI46_02220at 467.276 kb on - strand, within IAI46_02220at 467.276 kb on - strand, within IAI46_02220at 467.335 kb on + strand, within IAI46_02220at 467.389 kb on + strand, within IAI46_02220at 467.390 kb on - strand, within IAI46_02220at 467.482 kb on + strand, within IAI46_02220at 467.482 kb on + strand, within IAI46_02220at 467.483 kb on - strand, within IAI46_02220at 467.640 kb on + strand, within IAI46_02220at 467.640 kb on + strand, within IAI46_02220at 467.640 kb on + strand, within IAI46_02220at 467.640 kb on + strand, within IAI46_02220at 467.641 kb on - strand, within IAI46_02220at 467.641 kb on - strand, within IAI46_02220at 467.641 kb on - strand, within IAI46_02220at 467.641 kb on - strand, within IAI46_02220at 467.642 kb on + strand, within IAI46_02220at 467.642 kb on + strand, within IAI46_02220at 467.642 kb on + strand, within IAI46_02220at 467.642 kb on + strand, within IAI46_02220at 467.642 kb on + strand, within IAI46_02220at 467.643 kb on - strand, within IAI46_02220at 467.643 kb on - strand, within IAI46_02220at 467.643 kb on - strand, within IAI46_02220at 467.662 kb on + strand, within IAI46_02220at 467.662 kb on + strand, within IAI46_02220at 467.663 kb on - strand, within IAI46_02220at 467.741 kb on + strand, within IAI46_02220at 467.783 kb on + strand, within IAI46_02220at 467.783 kb on + strand, within IAI46_02220at 467.866 kb on - strandat 467.991 kb on + strandat 467.991 kb on + strandat 467.991 kb on + strandat 467.991 kb on + strandat 467.991 kb on + strandat 467.991 kb on + strandat 467.992 kb on - strandat 467.992 kb on - strandat 467.992 kb on - strandat 467.992 kb on - strandat 467.992 kb on - strandat 467.992 kb on - strandat 467.997 kb on - strandat 468.022 kb on - strandat 468.022 kb on - strandat 468.022 kb on - strandat 468.022 kb on - strandat 468.033 kb on + strandat 468.033 kb on + strandat 468.080 kb on - strandat 468.184 kb on + strandat 468.343 kb on + strandat 468.343 kb on + strandat 468.519 kb on + strandat 468.519 kb on + strandat 468.520 kb on - strandat 468.697 kb on - strand, within IAI46_02225

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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465,989 - IAI46_02215 0.39 +0.3
465,994 + IAI46_02215 0.40 -0.1
465,994 + IAI46_02215 0.40 -0.3
465,997 - IAI46_02215 0.40 +0.3
465,997 - IAI46_02215 0.40 -0.2
466,026 + IAI46_02215 0.43 +0.7
466,026 + IAI46_02215 0.43 -1.6
466,027 - IAI46_02215 0.43 +0.3
466,027 - IAI46_02215 0.43 +0.1
466,027 - IAI46_02215 0.43 +0.2
466,027 - IAI46_02215 0.43 +1.1
466,027 - IAI46_02215 0.43 -0.4
466,058 + IAI46_02215 0.45 +0.1
466,058 + IAI46_02215 0.45 -0.4
466,058 + IAI46_02215 0.45 +0.8
466,058 + IAI46_02215 0.45 -0.4
466,058 + IAI46_02215 0.45 +0.0
466,059 - IAI46_02215 0.46 -1.5
466,059 - IAI46_02215 0.46 +0.5
466,059 - IAI46_02215 0.46 -0.6
466,065 - IAI46_02215 0.46 +0.3
466,074 - IAI46_02215 0.47 +0.1
466,116 + IAI46_02215 0.51 +0.0
466,156 - IAI46_02215 0.54 -0.9
466,186 + IAI46_02215 0.57 -0.6
466,186 + IAI46_02215 0.57 +0.1
466,291 + IAI46_02215 0.66 +0.1
466,291 + IAI46_02215 0.66 +1.4
466,292 - IAI46_02215 0.66 +0.1
466,292 - IAI46_02215 0.66 +0.6
466,294 + IAI46_02215 0.66 -0.3
466,294 + IAI46_02215 0.66 +0.0
466,379 + IAI46_02215 0.74 +0.3
466,379 + IAI46_02215 0.74 +1.0
466,379 + IAI46_02215 0.74 -0.0
466,380 - IAI46_02215 0.74 +0.1
466,562 + IAI46_02215 0.90 -0.3
466,562 + IAI46_02215 0.90 -1.2
466,562 + IAI46_02215 0.90 +0.7
466,563 - IAI46_02215 0.90 +0.7
466,563 - IAI46_02215 0.90 +0.7
466,563 - IAI46_02215 0.90 +1.2
466,566 + +1.3
466,567 - -0.4
466,684 - -1.0
466,684 - -0.5
466,684 - +0.4
466,684 - +1.5
466,684 - +0.0
466,767 + -0.8
466,767 + -0.3
466,767 + -0.6
466,768 - +0.3
466,768 - +0.1
466,768 - -0.1
466,768 - +0.5
466,815 + +0.9
466,893 + -0.6
466,935 + +0.4
466,936 - -0.0
467,117 + IAI46_02220 0.14 -0.0
467,117 + IAI46_02220 0.14 -0.5
467,160 - IAI46_02220 0.19 +0.8
467,162 + IAI46_02220 0.19 +0.2
467,163 - IAI46_02220 0.19 +0.4
467,163 - IAI46_02220 0.19 -0.3
467,180 - IAI46_02220 0.21 +0.9
467,180 - IAI46_02220 0.21 +0.8
467,180 - IAI46_02220 0.21 +0.1
467,180 - IAI46_02220 0.21 +0.5
467,276 - IAI46_02220 0.31 -0.6
467,276 - IAI46_02220 0.31 +0.4
467,335 + IAI46_02220 0.37 +0.2
467,389 + IAI46_02220 0.43 +0.5
467,390 - IAI46_02220 0.43 +0.3
467,482 + IAI46_02220 0.53 +0.3
467,482 + IAI46_02220 0.53 +0.3
467,483 - IAI46_02220 0.53 +0.4
467,640 + IAI46_02220 0.70 +0.5
467,640 + IAI46_02220 0.70 -0.4
467,640 + IAI46_02220 0.70 +0.2
467,640 + IAI46_02220 0.70 +1.3
467,641 - IAI46_02220 0.70 +0.4
467,641 - IAI46_02220 0.70 -0.5
467,641 - IAI46_02220 0.70 -0.4
467,641 - IAI46_02220 0.70 -0.8
467,642 + IAI46_02220 0.70 +0.3
467,642 + IAI46_02220 0.70 +1.1
467,642 + IAI46_02220 0.70 -0.1
467,642 + IAI46_02220 0.70 +0.4
467,642 + IAI46_02220 0.70 -0.0
467,643 - IAI46_02220 0.70 -0.8
467,643 - IAI46_02220 0.70 -0.7
467,643 - IAI46_02220 0.70 +1.4
467,662 + IAI46_02220 0.72 -0.3
467,662 + IAI46_02220 0.72 -0.5
467,663 - IAI46_02220 0.72 -1.2
467,741 + IAI46_02220 0.80 +0.2
467,783 + IAI46_02220 0.85 +0.3
467,783 + IAI46_02220 0.85 -0.4
467,866 - -0.3
467,991 + +0.4
467,991 + -0.0
467,991 + +0.1
467,991 + +0.2
467,991 + +0.5
467,991 + +0.1
467,992 - -0.7
467,992 - +1.5
467,992 - +0.1
467,992 - +0.4
467,992 - -1.4
467,992 - -0.3
467,997 - +0.0
468,022 - -1.0
468,022 - -0.1
468,022 - +0.9
468,022 - -0.2
468,033 + -0.0
468,033 + -0.6
468,080 - -0.6
468,184 + -0.0
468,343 + -2.4
468,343 + +0.0
468,519 + -0.1
468,519 + -0.4
468,520 - +0.3
468,697 - IAI46_02225 0.13 -0.1

Or see this region's nucleotide sequence