Strain Fitness in Serratia liquefaciens MT49 around IAI46_01010

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01005 and IAI46_01010 overlap by 4 nucleotidesIAI46_01010 and IAI46_01015 are separated by 105 nucleotides IAI46_01005: IAI46_01005 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 224,904 to 225,980 _01005 IAI46_01010: IAI46_01010 - glycerophosphodiester phosphodiesterase, at 225,977 to 226,723 _01010 IAI46_01015: IAI46_01015 - AEC family transporter, at 226,829 to 227,785 _01015 Position (kb) 225 226 227Strain fitness (log2 ratio) -1 0 1at 225.087 kb on + strand, within IAI46_01005at 225.087 kb on + strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.156 kb on + strand, within IAI46_01005at 225.156 kb on + strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.181 kb on + strand, within IAI46_01005at 225.181 kb on + strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.183 kb on + strand, within IAI46_01005at 225.183 kb on + strand, within IAI46_01005at 225.184 kb on - strand, within IAI46_01005at 225.184 kb on - strand, within IAI46_01005at 225.198 kb on + strand, within IAI46_01005at 225.199 kb on - strand, within IAI46_01005at 225.233 kb on + strand, within IAI46_01005at 225.233 kb on + strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.348 kb on - strand, within IAI46_01005at 225.471 kb on + strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.571 kb on - strand, within IAI46_01005at 225.815 kb on - strand, within IAI46_01005at 225.815 kb on - strand, within IAI46_01005at 225.828 kb on - strand, within IAI46_01005at 225.910 kb on + strandat 225.913 kb on - strandat 225.964 kb on + strandat 225.965 kb on - strandat 226.045 kb on + strandat 226.128 kb on + strand, within IAI46_01010at 226.209 kb on + strand, within IAI46_01010at 226.209 kb on + strand, within IAI46_01010at 226.234 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.261 kb on - strand, within IAI46_01010at 226.330 kb on + strand, within IAI46_01010at 226.330 kb on + strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.555 kb on + strand, within IAI46_01010at 226.555 kb on + strand, within IAI46_01010at 226.616 kb on + strand, within IAI46_01010at 226.617 kb on - strand, within IAI46_01010at 226.690 kb on - strandat 226.904 kb on + strandat 227.113 kb on + strand, within IAI46_01015at 227.114 kb on - strand, within IAI46_01015at 227.167 kb on + strand, within IAI46_01015at 227.168 kb on - strand, within IAI46_01015at 227.248 kb on + strand, within IAI46_01015at 227.279 kb on - strand, within IAI46_01015at 227.279 kb on - strand, within IAI46_01015at 227.341 kb on + strand, within IAI46_01015at 227.501 kb on + strand, within IAI46_01015at 227.663 kb on + strand, within IAI46_01015at 227.688 kb on + strand, within IAI46_01015at 227.688 kb on + strand, within IAI46_01015at 227.689 kb on - strand, within IAI46_01015at 227.689 kb on - strand, within IAI46_01015

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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225,087 + IAI46_01005 0.17 +0.0
225,087 + IAI46_01005 0.17 -0.2
225,088 - IAI46_01005 0.17 +0.4
225,088 - IAI46_01005 0.17 +0.8
225,088 - IAI46_01005 0.17 +0.2
225,156 + IAI46_01005 0.23 +0.2
225,156 + IAI46_01005 0.23 -0.1
225,157 - IAI46_01005 0.23 +0.3
225,157 - IAI46_01005 0.23 -1.1
225,157 - IAI46_01005 0.23 +0.5
225,157 - IAI46_01005 0.23 -0.6
225,157 - IAI46_01005 0.23 +1.5
225,181 + IAI46_01005 0.26 -0.0
225,181 + IAI46_01005 0.26 -0.5
225,182 - IAI46_01005 0.26 +0.3
225,182 - IAI46_01005 0.26 +0.0
225,182 - IAI46_01005 0.26 +0.1
225,182 - IAI46_01005 0.26 -0.1
225,182 - IAI46_01005 0.26 +0.1
225,182 - IAI46_01005 0.26 -0.7
225,183 + IAI46_01005 0.26 +0.3
225,183 + IAI46_01005 0.26 +0.2
225,184 - IAI46_01005 0.26 -0.6
225,184 - IAI46_01005 0.26 +0.8
225,198 + IAI46_01005 0.27 +0.3
225,199 - IAI46_01005 0.27 -0.2
225,233 + IAI46_01005 0.31 +0.7
225,233 + IAI46_01005 0.31 -0.0
225,234 - IAI46_01005 0.31 +0.1
225,234 - IAI46_01005 0.31 +0.8
225,234 - IAI46_01005 0.31 -0.4
225,348 - IAI46_01005 0.41 -0.5
225,471 + IAI46_01005 0.53 -1.3
225,472 - IAI46_01005 0.53 +0.0
225,472 - IAI46_01005 0.53 -0.3
225,472 - IAI46_01005 0.53 +0.7
225,570 + IAI46_01005 0.62 +0.0
225,570 + IAI46_01005 0.62 +0.9
225,570 + IAI46_01005 0.62 +0.0
225,571 - IAI46_01005 0.62 -0.2
225,815 - IAI46_01005 0.85 +0.1
225,815 - IAI46_01005 0.85 -0.1
225,828 - IAI46_01005 0.86 -0.4
225,910 + +0.7
225,913 - +0.8
225,964 + +0.0
225,965 - +0.3
226,045 + +0.2
226,128 + IAI46_01010 0.20 +0.3
226,209 + IAI46_01010 0.31 +0.9
226,209 + IAI46_01010 0.31 +0.4
226,234 + IAI46_01010 0.34 -0.5
226,244 + IAI46_01010 0.36 +0.2
226,244 + IAI46_01010 0.36 -0.8
226,244 + IAI46_01010 0.36 -0.5
226,261 - IAI46_01010 0.38 +0.1
226,330 + IAI46_01010 0.47 -0.1
226,330 + IAI46_01010 0.47 +0.2
226,331 - IAI46_01010 0.47 +0.6
226,331 - IAI46_01010 0.47 -0.5
226,331 - IAI46_01010 0.47 +1.2
226,331 - IAI46_01010 0.47 +0.3
226,555 + IAI46_01010 0.77 +0.5
226,555 + IAI46_01010 0.77 +1.1
226,616 + IAI46_01010 0.86 +0.3
226,617 - IAI46_01010 0.86 -0.4
226,690 - -0.4
226,904 + -0.0
227,113 + IAI46_01015 0.30 -0.4
227,114 - IAI46_01015 0.30 +0.2
227,167 + IAI46_01015 0.35 -0.5
227,168 - IAI46_01015 0.35 -0.2
227,248 + IAI46_01015 0.44 -0.6
227,279 - IAI46_01015 0.47 -0.0
227,279 - IAI46_01015 0.47 +0.8
227,341 + IAI46_01015 0.54 -0.5
227,501 + IAI46_01015 0.70 -0.5
227,663 + IAI46_01015 0.87 +0.2
227,688 + IAI46_01015 0.90 +0.3
227,688 + IAI46_01015 0.90 -0.1
227,689 - IAI46_01015 0.90 +0.6
227,689 - IAI46_01015 0.90 -0.3

Or see this region's nucleotide sequence