Strain Fitness in Serratia liquefaciens MT49 around IAI46_00660

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00650 and IAI46_00655 are separated by 135 nucleotidesIAI46_00655 and IAI46_00660 are separated by 62 nucleotidesIAI46_00660 and IAI46_00665 are separated by 43 nucleotidesIAI46_00665 and IAI46_00670 are separated by 74 nucleotides IAI46_00650: IAI46_00650 - amino acid permease, at 153,475 to 154,878 _00650 IAI46_00655: IAI46_00655 - tRNA-Arg, at 155,014 to 155,090 _00655 IAI46_00660: IAI46_00660 - tRNA-His, at 155,153 to 155,228 _00660 IAI46_00665: IAI46_00665 - tRNA-Leu, at 155,272 to 155,358 _00665 IAI46_00670: IAI46_00670 - tRNA-Pro, at 155,433 to 155,509 _00670 Position (kb) 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 154.197 kb on + strand, within IAI46_00650at 154.198 kb on - strand, within IAI46_00650at 154.209 kb on + strand, within IAI46_00650at 154.223 kb on - strand, within IAI46_00650at 154.223 kb on - strand, within IAI46_00650at 154.317 kb on + strand, within IAI46_00650at 154.317 kb on + strand, within IAI46_00650at 154.342 kb on - strand, within IAI46_00650at 154.390 kb on + strand, within IAI46_00650at 154.390 kb on + strand, within IAI46_00650at 154.390 kb on + strand, within IAI46_00650at 154.390 kb on + strand, within IAI46_00650at 154.390 kb on + strand, within IAI46_00650at 154.391 kb on - strand, within IAI46_00650at 154.391 kb on - strand, within IAI46_00650at 154.391 kb on - strand, within IAI46_00650at 154.391 kb on - strand, within IAI46_00650at 154.391 kb on - strand, within IAI46_00650at 154.391 kb on - strand, within IAI46_00650at 154.391 kb on - strand, within IAI46_00650at 154.391 kb on - strand, within IAI46_00650at 154.393 kb on - strand, within IAI46_00650at 154.404 kb on + strand, within IAI46_00650at 154.404 kb on + strand, within IAI46_00650at 154.404 kb on + strand, within IAI46_00650at 154.405 kb on - strand, within IAI46_00650at 154.411 kb on + strand, within IAI46_00650at 154.411 kb on + strand, within IAI46_00650at 154.412 kb on - strand, within IAI46_00650at 154.412 kb on - strand, within IAI46_00650at 154.412 kb on - strand, within IAI46_00650at 154.511 kb on + strand, within IAI46_00650at 154.528 kb on - strand, within IAI46_00650at 154.531 kb on + strand, within IAI46_00650at 154.532 kb on - strand, within IAI46_00650at 154.564 kb on + strand, within IAI46_00650at 154.564 kb on + strand, within IAI46_00650at 154.565 kb on - strand, within IAI46_00650at 154.565 kb on - strand, within IAI46_00650at 154.570 kb on + strand, within IAI46_00650at 154.570 kb on + strand, within IAI46_00650at 154.570 kb on + strand, within IAI46_00650at 154.571 kb on - strand, within IAI46_00650at 154.630 kb on + strand, within IAI46_00650at 154.631 kb on - strand, within IAI46_00650at 154.674 kb on + strand, within IAI46_00650at 154.675 kb on - strand, within IAI46_00650at 154.675 kb on - strand, within IAI46_00650at 154.683 kb on + strand, within IAI46_00650at 154.684 kb on - strand, within IAI46_00650at 154.684 kb on - strand, within IAI46_00650at 154.684 kb on - strand, within IAI46_00650at 154.684 kb on - strand, within IAI46_00650at 154.684 kb on - strand, within IAI46_00650at 154.684 kb on - strand, within IAI46_00650at 154.693 kb on + strand, within IAI46_00650at 154.693 kb on + strand, within IAI46_00650at 154.693 kb on + strand, within IAI46_00650at 154.693 kb on + strand, within IAI46_00650at 154.694 kb on - strand, within IAI46_00650at 154.694 kb on - strand, within IAI46_00650at 154.694 kb on - strand, within IAI46_00650at 154.694 kb on - strand, within IAI46_00650at 154.702 kb on + strand, within IAI46_00650at 154.702 kb on + strand, within IAI46_00650at 154.702 kb on + strand, within IAI46_00650at 154.702 kb on + strand, within IAI46_00650at 154.702 kb on + strand, within IAI46_00650at 154.702 kb on + strand, within IAI46_00650at 154.702 kb on + strand, within IAI46_00650at 154.703 kb on - strand, within IAI46_00650at 154.703 kb on - strand, within IAI46_00650at 154.703 kb on - strand, within IAI46_00650at 154.813 kb on + strandat 154.813 kb on + strandat 154.933 kb on - strandat 155.234 kb on + strandat 155.234 kb on + strandat 155.322 kb on + strand, within IAI46_00665at 155.396 kb on + strandat 155.416 kb on + strandat 155.416 kb on + strandat 155.543 kb on + strandat 155.551 kb on + strandat 155.551 kb on + strandat 155.551 kb on + strandat 155.551 kb on + strandat 155.551 kb on + strandat 155.552 kb on - strandat 155.552 kb on - strandat 155.552 kb on - strandat 155.558 kb on + strandat 155.558 kb on + strandat 155.558 kb on + strandat 155.559 kb on - strandat 155.727 kb on + strandat 155.761 kb on + strandat 155.761 kb on + strandat 155.770 kb on + strandat 155.771 kb on - strandat 155.850 kb on - strandat 155.931 kb on - strandat 155.997 kb on + strandat 156.065 kb on + strandat 156.066 kb on - strandat 156.066 kb on - strandat 156.066 kb on - strandat 156.069 kb on + strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.070 kb on - strandat 156.089 kb on + strandat 156.089 kb on + strandat 156.089 kb on + strandat 156.089 kb on + strandat 156.089 kb on + strandat 156.089 kb on + strandat 156.090 kb on - strandat 156.090 kb on - strandat 156.090 kb on - strandat 156.090 kb on - strandat 156.100 kb on + strandat 156.101 kb on - strandat 156.110 kb on - strandat 156.138 kb on + strandat 156.148 kb on - strandat 156.148 kb on - strandat 156.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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154,197 + IAI46_00650 0.51 +1.8
154,198 - IAI46_00650 0.51 +0.2
154,209 + IAI46_00650 0.52 -0.6
154,223 - IAI46_00650 0.53 -0.6
154,223 - IAI46_00650 0.53 +0.1
154,317 + IAI46_00650 0.60 +0.1
154,317 + IAI46_00650 0.60 +0.2
154,342 - IAI46_00650 0.62 +0.1
154,390 + IAI46_00650 0.65 -0.2
154,390 + IAI46_00650 0.65 +0.2
154,390 + IAI46_00650 0.65 +0.3
154,390 + IAI46_00650 0.65 +1.2
154,390 + IAI46_00650 0.65 -0.7
154,391 - IAI46_00650 0.65 +0.2
154,391 - IAI46_00650 0.65 -1.5
154,391 - IAI46_00650 0.65 -0.6
154,391 - IAI46_00650 0.65 +1.8
154,391 - IAI46_00650 0.65 +2.1
154,391 - IAI46_00650 0.65 +0.7
154,391 - IAI46_00650 0.65 +0.5
154,391 - IAI46_00650 0.65 -0.6
154,393 - IAI46_00650 0.65 +0.5
154,404 + IAI46_00650 0.66 -0.6
154,404 + IAI46_00650 0.66 +1.2
154,404 + IAI46_00650 0.66 +0.5
154,405 - IAI46_00650 0.66 +0.0
154,411 + IAI46_00650 0.67 -1.7
154,411 + IAI46_00650 0.67 -0.0
154,412 - IAI46_00650 0.67 +2.0
154,412 - IAI46_00650 0.67 -1.0
154,412 - IAI46_00650 0.67 -0.6
154,511 + IAI46_00650 0.74 +0.0
154,528 - IAI46_00650 0.75 -0.0
154,531 + IAI46_00650 0.75 -0.7
154,532 - IAI46_00650 0.75 +0.2
154,564 + IAI46_00650 0.78 +1.1
154,564 + IAI46_00650 0.78 +0.5
154,565 - IAI46_00650 0.78 +0.1
154,565 - IAI46_00650 0.78 +0.1
154,570 + IAI46_00650 0.78 -0.8
154,570 + IAI46_00650 0.78 -0.2
154,570 + IAI46_00650 0.78 +0.2
154,571 - IAI46_00650 0.78 +1.0
154,630 + IAI46_00650 0.82 -0.2
154,631 - IAI46_00650 0.82 -0.2
154,674 + IAI46_00650 0.85 +0.6
154,675 - IAI46_00650 0.85 +0.9
154,675 - IAI46_00650 0.85 +0.1
154,683 + IAI46_00650 0.86 +1.2
154,684 - IAI46_00650 0.86 +1.0
154,684 - IAI46_00650 0.86 +0.4
154,684 - IAI46_00650 0.86 -0.2
154,684 - IAI46_00650 0.86 +0.6
154,684 - IAI46_00650 0.86 +0.7
154,684 - IAI46_00650 0.86 +0.2
154,693 + IAI46_00650 0.87 -0.1
154,693 + IAI46_00650 0.87 -0.5
154,693 + IAI46_00650 0.87 -0.1
154,693 + IAI46_00650 0.87 +0.4
154,694 - IAI46_00650 0.87 +0.4
154,694 - IAI46_00650 0.87 +0.1
154,694 - IAI46_00650 0.87 +1.7
154,694 - IAI46_00650 0.87 +0.1
154,702 + IAI46_00650 0.87 +0.7
154,702 + IAI46_00650 0.87 +0.6
154,702 + IAI46_00650 0.87 +0.3
154,702 + IAI46_00650 0.87 +0.2
154,702 + IAI46_00650 0.87 +1.6
154,702 + IAI46_00650 0.87 -0.3
154,702 + IAI46_00650 0.87 -0.2
154,703 - IAI46_00650 0.87 +0.7
154,703 - IAI46_00650 0.87 +0.9
154,703 - IAI46_00650 0.87 +0.3
154,813 + +0.3
154,813 + +0.1
154,933 - -0.1
155,234 + +0.1
155,234 + +0.3
155,322 + IAI46_00665 0.57 -1.0
155,396 + +0.4
155,416 + +0.3
155,416 + -0.7
155,543 + -0.3
155,551 + -0.4
155,551 + -0.3
155,551 + -1.0
155,551 + +0.2
155,551 + +0.1
155,552 - -0.1
155,552 - -0.3
155,552 - -0.0
155,558 + +0.1
155,558 + -0.0
155,558 + +0.3
155,559 - +0.8
155,727 + -0.7
155,761 + +0.4
155,761 + -0.2
155,770 + +0.1
155,771 - +0.8
155,850 - +0.1
155,931 - +0.6
155,997 + -0.1
156,065 + +1.2
156,066 - +0.4
156,066 - -0.7
156,066 - +0.8
156,069 + +0.4
156,070 - +0.5
156,070 - -0.4
156,070 - +1.4
156,070 - -0.0
156,070 - +0.8
156,070 - +1.2
156,070 - -0.4
156,070 - +0.1
156,070 - -0.4
156,070 - -0.3
156,089 + -0.1
156,089 + +0.2
156,089 + -0.1
156,089 + -0.5
156,089 + -0.3
156,089 + +0.3
156,090 - -0.1
156,090 - -0.6
156,090 - +1.3
156,090 - -2.0
156,100 + +2.2
156,101 - +1.0
156,110 - +0.2
156,138 + +0.1
156,148 - +0.3
156,148 - +0.7
156,148 - -0.9

Or see this region's nucleotide sequence