Strain Fitness in Serratia liquefaciens MT49 around IAI46_00205

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00195 and IAI46_00200 are separated by 124 nucleotidesIAI46_00200 and IAI46_00205 are separated by 110 nucleotidesIAI46_00205 and IAI46_00210 are separated by 145 nucleotides IAI46_00195: IAI46_00195 - methyl-accepting chemotaxis protein, at 43,329 to 45,257 _00195 IAI46_00200: IAI46_00200 - superoxide dismutase [Mn], at 45,382 to 46,002 _00200 IAI46_00205: IAI46_00205 - formate dehydrogenase accessory sulfurtransferase FdhD, at 46,113 to 46,958 _00205 IAI46_00210: IAI46_00210 - formate dehydrogenase-N subunit alpha, at 47,104 to 50,151 _00210 Position (kb) 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 45.128 kb on + strandat 45.128 kb on + strandat 45.129 kb on - strandat 45.129 kb on - strandat 45.129 kb on - strandat 45.129 kb on - strandat 45.136 kb on + strandat 45.136 kb on + strandat 45.136 kb on + strandat 45.137 kb on - strandat 45.137 kb on - strandat 45.137 kb on - strandat 45.137 kb on - strandat 45.172 kb on - strandat 45.315 kb on - strandat 45.370 kb on - strandat 45.383 kb on + strandat 45.574 kb on - strand, within IAI46_00200at 45.574 kb on - strand, within IAI46_00200at 46.003 kb on - strandat 46.024 kb on - strandat 46.024 kb on - strandat 46.024 kb on - strandat 46.053 kb on + strandat 46.054 kb on - strandat 46.070 kb on - strandat 46.070 kb on - strandat 46.070 kb on - strandat 46.070 kb on - strandat 46.071 kb on + strandat 46.071 kb on + strandat 46.072 kb on - strandat 46.072 kb on - strandat 46.072 kb on - strandat 46.072 kb on - strandat 46.072 kb on - strandat 46.114 kb on + strandat 46.127 kb on + strandat 46.127 kb on + strandat 46.127 kb on + strandat 46.128 kb on - strandat 46.157 kb on + strandat 46.158 kb on - strandat 46.300 kb on + strand, within IAI46_00205at 46.320 kb on + strand, within IAI46_00205at 46.321 kb on - strand, within IAI46_00205at 46.324 kb on - strand, within IAI46_00205at 46.356 kb on + strand, within IAI46_00205at 46.413 kb on + strand, within IAI46_00205at 46.413 kb on + strand, within IAI46_00205at 46.414 kb on - strand, within IAI46_00205at 46.414 kb on - strand, within IAI46_00205at 46.414 kb on - strand, within IAI46_00205at 46.431 kb on + strand, within IAI46_00205at 46.431 kb on + strand, within IAI46_00205at 46.432 kb on - strand, within IAI46_00205at 46.480 kb on - strand, within IAI46_00205at 46.514 kb on + strand, within IAI46_00205at 46.584 kb on - strand, within IAI46_00205at 46.590 kb on + strand, within IAI46_00205at 46.591 kb on - strand, within IAI46_00205at 46.665 kb on + strand, within IAI46_00205at 46.665 kb on + strand, within IAI46_00205at 46.666 kb on - strand, within IAI46_00205at 46.666 kb on - strand, within IAI46_00205at 46.685 kb on + strand, within IAI46_00205at 46.697 kb on + strand, within IAI46_00205at 46.705 kb on - strand, within IAI46_00205at 46.705 kb on - strand, within IAI46_00205at 46.705 kb on - strand, within IAI46_00205at 46.706 kb on + strand, within IAI46_00205at 46.706 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.817 kb on + strand, within IAI46_00205at 46.819 kb on + strand, within IAI46_00205at 46.819 kb on + strand, within IAI46_00205at 46.819 kb on + strand, within IAI46_00205at 46.888 kb on + strandat 46.889 kb on - strandat 46.929 kb on + strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.947 kb on + strandat 46.948 kb on - strandat 46.949 kb on + strandat 46.949 kb on + strandat 46.949 kb on + strandat 46.949 kb on + strandat 46.950 kb on - strandat 46.950 kb on - strandat 46.950 kb on - strandat 46.950 kb on - strandat 46.960 kb on + strandat 46.960 kb on + strandat 46.988 kb on + strandat 46.988 kb on + strandat 46.988 kb on + strandat 46.989 kb on - strandat 46.989 kb on - strandat 46.989 kb on - strandat 47.003 kb on + strandat 47.004 kb on - strandat 47.131 kb on - strandat 47.215 kb on + strandat 47.244 kb on + strandat 47.245 kb on - strandat 47.247 kb on + strandat 47.248 kb on - strandat 47.248 kb on - strandat 47.253 kb on + strandat 47.253 kb on + strandat 47.253 kb on + strandat 47.253 kb on + strandat 47.253 kb on + strandat 47.254 kb on - strandat 47.254 kb on - strandat 47.254 kb on - strandat 47.254 kb on - strandat 47.254 kb on - strandat 47.257 kb on + strandat 47.257 kb on + strandat 47.257 kb on + strandat 47.258 kb on - strandat 47.258 kb on - strandat 47.258 kb on - strandat 47.258 kb on - strandat 47.258 kb on - strandat 47.258 kb on - strandat 47.287 kb on + strandat 47.287 kb on + strandat 47.288 kb on - strandat 47.288 kb on - strandat 47.431 kb on + strand, within IAI46_00210at 47.669 kb on + strand, within IAI46_00210at 47.874 kb on + strand, within IAI46_00210at 47.918 kb on - strand, within IAI46_00210at 47.918 kb on - strand, within IAI46_00210at 47.920 kb on - strand, within IAI46_00210

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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45,128 + +0.2
45,128 + -0.5
45,129 - -0.7
45,129 - -0.7
45,129 - -0.2
45,129 - +0.1
45,136 + +1.6
45,136 + +0.0
45,136 + +0.6
45,137 - -0.3
45,137 - -0.1
45,137 - -0.3
45,137 - -0.0
45,172 - -0.8
45,315 - +0.2
45,370 - +0.1
45,383 + +0.7
45,574 - IAI46_00200 0.31 +0.5
45,574 - IAI46_00200 0.31 -0.4
46,003 - -0.7
46,024 - +0.0
46,024 - -0.4
46,024 - +0.9
46,053 + +0.2
46,054 - +1.3
46,070 - +0.3
46,070 - -0.5
46,070 - -0.7
46,070 - +0.7
46,071 + -0.4
46,071 + +0.4
46,072 - -1.9
46,072 - +0.6
46,072 - -2.7
46,072 - -0.0
46,072 - +0.3
46,114 + -0.0
46,127 + -0.3
46,127 + -0.2
46,127 + +0.1
46,128 - -0.2
46,157 + -0.8
46,158 - -0.0
46,300 + IAI46_00205 0.22 -0.9
46,320 + IAI46_00205 0.24 +0.1
46,321 - IAI46_00205 0.25 +0.2
46,324 - IAI46_00205 0.25 +0.1
46,356 + IAI46_00205 0.29 +0.8
46,413 + IAI46_00205 0.35 +1.9
46,413 + IAI46_00205 0.35 -0.9
46,414 - IAI46_00205 0.36 -1.0
46,414 - IAI46_00205 0.36 +0.3
46,414 - IAI46_00205 0.36 +0.9
46,431 + IAI46_00205 0.38 +0.5
46,431 + IAI46_00205 0.38 -0.1
46,432 - IAI46_00205 0.38 +0.3
46,480 - IAI46_00205 0.43 -0.2
46,514 + IAI46_00205 0.47 +0.4
46,584 - IAI46_00205 0.56 -0.3
46,590 + IAI46_00205 0.56 +0.3
46,591 - IAI46_00205 0.57 +0.6
46,665 + IAI46_00205 0.65 +0.0
46,665 + IAI46_00205 0.65 +0.6
46,666 - IAI46_00205 0.65 +0.7
46,666 - IAI46_00205 0.65 +0.4
46,685 + IAI46_00205 0.68 +0.3
46,697 + IAI46_00205 0.69 -2.0
46,705 - IAI46_00205 0.70 +0.4
46,705 - IAI46_00205 0.70 +0.1
46,705 - IAI46_00205 0.70 +0.2
46,706 + IAI46_00205 0.70 -0.5
46,706 + IAI46_00205 0.70 -0.0
46,711 + IAI46_00205 0.71 -0.7
46,711 + IAI46_00205 0.71 +0.2
46,711 + IAI46_00205 0.71 +1.0
46,711 + IAI46_00205 0.71 +1.4
46,711 + IAI46_00205 0.71 -0.4
46,712 - IAI46_00205 0.71 +0.1
46,712 - IAI46_00205 0.71 +0.3
46,712 - IAI46_00205 0.71 +0.6
46,712 - IAI46_00205 0.71 +0.4
46,712 - IAI46_00205 0.71 +0.9
46,712 - IAI46_00205 0.71 -0.2
46,817 + IAI46_00205 0.83 +0.6
46,819 + IAI46_00205 0.83 -0.3
46,819 + IAI46_00205 0.83 +0.3
46,819 + IAI46_00205 0.83 +0.1
46,888 + +0.5
46,889 - +0.2
46,929 + +0.8
46,930 - +0.3
46,930 - +0.2
46,930 - -0.2
46,930 - +0.5
46,930 - +0.5
46,930 - +1.0
46,947 + +0.7
46,948 - +0.1
46,949 + +1.0
46,949 + +0.0
46,949 + +0.2
46,949 + +0.2
46,950 - +0.3
46,950 - -0.7
46,950 - -0.6
46,950 - -1.1
46,960 + +0.7
46,960 + -0.0
46,988 + +0.4
46,988 + -0.5
46,988 + -0.5
46,989 - +0.5
46,989 - +0.2
46,989 - +2.8
47,003 + -0.1
47,004 - +0.7
47,131 - -0.2
47,215 + -0.3
47,244 + -0.4
47,245 - +0.3
47,247 + +1.8
47,248 - +0.4
47,248 - -0.3
47,253 + +0.2
47,253 + +0.2
47,253 + -0.2
47,253 + +0.3
47,253 + -0.2
47,254 - -0.9
47,254 - +0.8
47,254 - +1.0
47,254 - -1.0
47,254 - +0.7
47,257 + +0.6
47,257 + +0.5
47,257 + +0.5
47,258 - +0.4
47,258 - +1.8
47,258 - -0.7
47,258 - -0.6
47,258 - -0.5
47,258 - +0.9
47,287 + +0.5
47,287 + +0.0
47,288 - -0.0
47,288 - -0.3
47,431 + IAI46_00210 0.11 +0.2
47,669 + IAI46_00210 0.19 +0.5
47,874 + IAI46_00210 0.25 +0.4
47,918 - IAI46_00210 0.27 -0.3
47,918 - IAI46_00210 0.27 -0.4
47,920 - IAI46_00210 0.27 +0.7

Or see this region's nucleotide sequence