Strain Fitness in Serratia liquefaciens MT49 around IAI46_24965

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24960 and IAI46_24965 are separated by 112 nucleotidesIAI46_24965 and IAI46_24970 are separated by 35 nucleotides IAI46_24960: IAI46_24960 - nitrogen regulation protein NR(I), at 5,327,232 to 5,328,644 _24960 IAI46_24965: IAI46_24965 - YshB family small membrane protein, at 5,328,757 to 5,328,879 _24965 IAI46_24970: IAI46_24970 - oxygen-independent coproporphyrinogen III oxidase, at 5,328,915 to 5,330,288 _24970 Position (kb) 5328 5329Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5327.823 kb on - strand, within IAI46_24960at 5328.055 kb on + strand, within IAI46_24960at 5328.056 kb on - strand, within IAI46_24960at 5328.056 kb on - strand, within IAI46_24960at 5328.186 kb on - strand, within IAI46_24960at 5328.204 kb on + strand, within IAI46_24960at 5328.204 kb on + strand, within IAI46_24960at 5328.204 kb on + strand, within IAI46_24960at 5328.300 kb on - strand, within IAI46_24960at 5328.300 kb on - strand, within IAI46_24960at 5328.335 kb on - strand, within IAI46_24960at 5328.362 kb on - strand, within IAI46_24960at 5328.376 kb on + strand, within IAI46_24960at 5328.376 kb on + strand, within IAI46_24960at 5328.376 kb on + strand, within IAI46_24960at 5328.376 kb on + strand, within IAI46_24960at 5328.377 kb on - strand, within IAI46_24960at 5328.422 kb on + strand, within IAI46_24960at 5328.554 kb on + strandat 5328.566 kb on + strandat 5328.567 kb on - strandat 5328.605 kb on + strandat 5328.606 kb on - strandat 5328.642 kb on + strandat 5328.642 kb on + strandat 5328.643 kb on - strandat 5328.643 kb on - strandat 5328.661 kb on + strandat 5328.662 kb on - strandat 5328.662 kb on - strandat 5328.695 kb on - strandat 5328.706 kb on + strandat 5328.726 kb on + strandat 5328.726 kb on + strandat 5328.726 kb on + strandat 5328.726 kb on + strandat 5328.726 kb on + strandat 5328.865 kb on - strand, within IAI46_24965at 5328.865 kb on - strand, within IAI46_24965at 5328.865 kb on - strand, within IAI46_24965at 5328.909 kb on + strandat 5328.909 kb on + strandat 5328.921 kb on - strandat 5328.961 kb on + strandat 5328.961 kb on + strandat 5328.961 kb on + strandat 5328.961 kb on + strandat 5328.961 kb on + strandat 5328.962 kb on - strandat 5328.962 kb on - strandat 5328.966 kb on - strandat 5328.966 kb on - strandat 5328.966 kb on - strandat 5328.984 kb on - strandat 5328.984 kb on - strandat 5328.997 kb on - strandat 5329.094 kb on - strand, within IAI46_24970at 5329.094 kb on - strand, within IAI46_24970at 5329.125 kb on + strand, within IAI46_24970at 5329.125 kb on + strand, within IAI46_24970at 5329.125 kb on + strand, within IAI46_24970at 5329.126 kb on - strand, within IAI46_24970at 5329.126 kb on - strand, within IAI46_24970at 5329.126 kb on - strand, within IAI46_24970at 5329.126 kb on - strand, within IAI46_24970at 5329.135 kb on + strand, within IAI46_24970at 5329.136 kb on - strand, within IAI46_24970at 5329.136 kb on - strand, within IAI46_24970at 5329.136 kb on - strand, within IAI46_24970at 5329.252 kb on + strand, within IAI46_24970at 5329.282 kb on + strand, within IAI46_24970at 5329.282 kb on + strand, within IAI46_24970at 5329.282 kb on + strand, within IAI46_24970at 5329.282 kb on + strand, within IAI46_24970at 5329.282 kb on + strand, within IAI46_24970at 5329.282 kb on + strand, within IAI46_24970at 5329.282 kb on + strand, within IAI46_24970at 5329.283 kb on - strand, within IAI46_24970at 5329.283 kb on - strand, within IAI46_24970at 5329.283 kb on - strand, within IAI46_24970at 5329.283 kb on - strand, within IAI46_24970at 5329.283 kb on - strand, within IAI46_24970at 5329.349 kb on + strand, within IAI46_24970at 5329.350 kb on - strand, within IAI46_24970at 5329.350 kb on - strand, within IAI46_24970at 5329.351 kb on + strand, within IAI46_24970at 5329.351 kb on + strand, within IAI46_24970at 5329.351 kb on + strand, within IAI46_24970at 5329.351 kb on + strand, within IAI46_24970at 5329.352 kb on - strand, within IAI46_24970at 5329.437 kb on - strand, within IAI46_24970at 5329.557 kb on - strand, within IAI46_24970at 5329.564 kb on + strand, within IAI46_24970at 5329.564 kb on + strand, within IAI46_24970at 5329.565 kb on - strand, within IAI46_24970at 5329.565 kb on - strand, within IAI46_24970at 5329.565 kb on - strand, within IAI46_24970at 5329.565 kb on - strand, within IAI46_24970at 5329.568 kb on + strand, within IAI46_24970at 5329.568 kb on + strand, within IAI46_24970at 5329.568 kb on + strand, within IAI46_24970at 5329.569 kb on - strand, within IAI46_24970at 5329.569 kb on - strand, within IAI46_24970at 5329.572 kb on + strand, within IAI46_24970at 5329.593 kb on + strand, within IAI46_24970at 5329.593 kb on + strand, within IAI46_24970at 5329.593 kb on + strand, within IAI46_24970at 5329.593 kb on + strand, within IAI46_24970at 5329.594 kb on - strand, within IAI46_24970at 5329.594 kb on - strand, within IAI46_24970at 5329.618 kb on + strand, within IAI46_24970at 5329.618 kb on + strand, within IAI46_24970at 5329.618 kb on + strand, within IAI46_24970at 5329.619 kb on - strand, within IAI46_24970at 5329.654 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.659 kb on + strand, within IAI46_24970at 5329.660 kb on - strand, within IAI46_24970at 5329.666 kb on - strand, within IAI46_24970at 5329.667 kb on + strand, within IAI46_24970at 5329.680 kb on - strand, within IAI46_24970at 5329.718 kb on + strand, within IAI46_24970at 5329.719 kb on - strand, within IAI46_24970at 5329.719 kb on - strand, within IAI46_24970at 5329.719 kb on - strand, within IAI46_24970at 5329.763 kb on + strand, within IAI46_24970at 5329.796 kb on + strand, within IAI46_24970at 5329.808 kb on + strand, within IAI46_24970

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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5,327,823 - IAI46_24960 0.42 -0.1
5,328,055 + IAI46_24960 0.58 -1.2
5,328,056 - IAI46_24960 0.58 +0.1
5,328,056 - IAI46_24960 0.58 +0.9
5,328,186 - IAI46_24960 0.68 +0.7
5,328,204 + IAI46_24960 0.69 -0.1
5,328,204 + IAI46_24960 0.69 +0.2
5,328,204 + IAI46_24960 0.69 -0.6
5,328,300 - IAI46_24960 0.76 -0.4
5,328,300 - IAI46_24960 0.76 -1.2
5,328,335 - IAI46_24960 0.78 -0.4
5,328,362 - IAI46_24960 0.80 -0.5
5,328,376 + IAI46_24960 0.81 -1.3
5,328,376 + IAI46_24960 0.81 -0.9
5,328,376 + IAI46_24960 0.81 -0.1
5,328,376 + IAI46_24960 0.81 -0.9
5,328,377 - IAI46_24960 0.81 +0.4
5,328,422 + IAI46_24960 0.84 +0.6
5,328,554 + -1.1
5,328,566 + +0.4
5,328,567 - +0.2
5,328,605 + -0.3
5,328,606 - +0.6
5,328,642 + +0.2
5,328,642 + -0.4
5,328,643 - +0.2
5,328,643 - -0.1
5,328,661 + -0.5
5,328,662 - -1.4
5,328,662 - +0.5
5,328,695 - -0.5
5,328,706 + -0.5
5,328,726 + -0.4
5,328,726 + +1.3
5,328,726 + -0.6
5,328,726 + -0.7
5,328,726 + +0.0
5,328,865 - IAI46_24965 0.88 +0.4
5,328,865 - IAI46_24965 0.88 -0.8
5,328,865 - IAI46_24965 0.88 +0.2
5,328,909 + +0.0
5,328,909 + +0.0
5,328,921 - -0.9
5,328,961 + -1.0
5,328,961 + +0.9
5,328,961 + +0.2
5,328,961 + -1.0
5,328,961 + -0.4
5,328,962 - +0.5
5,328,962 - +0.1
5,328,966 - -1.5
5,328,966 - -0.7
5,328,966 - -0.0
5,328,984 - -0.3
5,328,984 - +0.5
5,328,997 - +1.3
5,329,094 - IAI46_24970 0.13 +0.3
5,329,094 - IAI46_24970 0.13 +0.0
5,329,125 + IAI46_24970 0.15 +0.1
5,329,125 + IAI46_24970 0.15 +0.3
5,329,125 + IAI46_24970 0.15 -0.4
5,329,126 - IAI46_24970 0.15 -0.2
5,329,126 - IAI46_24970 0.15 -1.1
5,329,126 - IAI46_24970 0.15 +0.6
5,329,126 - IAI46_24970 0.15 -0.5
5,329,135 + IAI46_24970 0.16 -0.4
5,329,136 - IAI46_24970 0.16 -0.1
5,329,136 - IAI46_24970 0.16 -0.2
5,329,136 - IAI46_24970 0.16 +0.0
5,329,252 + IAI46_24970 0.25 +0.5
5,329,282 + IAI46_24970 0.27 +0.3
5,329,282 + IAI46_24970 0.27 -0.3
5,329,282 + IAI46_24970 0.27 -0.2
5,329,282 + IAI46_24970 0.27 -0.0
5,329,282 + IAI46_24970 0.27 -0.3
5,329,282 + IAI46_24970 0.27 +0.5
5,329,282 + IAI46_24970 0.27 +0.2
5,329,283 - IAI46_24970 0.27 +0.4
5,329,283 - IAI46_24970 0.27 +0.2
5,329,283 - IAI46_24970 0.27 +0.3
5,329,283 - IAI46_24970 0.27 -2.0
5,329,283 - IAI46_24970 0.27 +0.6
5,329,349 + IAI46_24970 0.32 -0.0
5,329,350 - IAI46_24970 0.32 -0.0
5,329,350 - IAI46_24970 0.32 -0.4
5,329,351 + IAI46_24970 0.32 -0.8
5,329,351 + IAI46_24970 0.32 -0.6
5,329,351 + IAI46_24970 0.32 +0.6
5,329,351 + IAI46_24970 0.32 +0.0
5,329,352 - IAI46_24970 0.32 -1.1
5,329,437 - IAI46_24970 0.38 +2.6
5,329,557 - IAI46_24970 0.47 +0.1
5,329,564 + IAI46_24970 0.47 -1.3
5,329,564 + IAI46_24970 0.47 +0.9
5,329,565 - IAI46_24970 0.47 -0.9
5,329,565 - IAI46_24970 0.47 +0.6
5,329,565 - IAI46_24970 0.47 -0.4
5,329,565 - IAI46_24970 0.47 +0.4
5,329,568 + IAI46_24970 0.48 -0.6
5,329,568 + IAI46_24970 0.48 -0.4
5,329,568 + IAI46_24970 0.48 -0.1
5,329,569 - IAI46_24970 0.48 -0.4
5,329,569 - IAI46_24970 0.48 +1.0
5,329,572 + IAI46_24970 0.48 +0.2
5,329,593 + IAI46_24970 0.49 +0.3
5,329,593 + IAI46_24970 0.49 +0.1
5,329,593 + IAI46_24970 0.49 -0.3
5,329,593 + IAI46_24970 0.49 -1.3
5,329,594 - IAI46_24970 0.49 +0.3
5,329,594 - IAI46_24970 0.49 +2.9
5,329,618 + IAI46_24970 0.51 +0.2
5,329,618 + IAI46_24970 0.51 +1.0
5,329,618 + IAI46_24970 0.51 +0.3
5,329,619 - IAI46_24970 0.51 +0.8
5,329,654 + IAI46_24970 0.54 +0.1
5,329,659 + IAI46_24970 0.54 -0.1
5,329,659 + IAI46_24970 0.54 -1.3
5,329,659 + IAI46_24970 0.54 -0.9
5,329,659 + IAI46_24970 0.54 +0.4
5,329,659 + IAI46_24970 0.54 -1.0
5,329,660 - IAI46_24970 0.54 +0.4
5,329,666 - IAI46_24970 0.55 -0.2
5,329,667 + IAI46_24970 0.55 +0.0
5,329,680 - IAI46_24970 0.56 -0.3
5,329,718 + IAI46_24970 0.58 -0.1
5,329,719 - IAI46_24970 0.59 -0.1
5,329,719 - IAI46_24970 0.59 -0.5
5,329,719 - IAI46_24970 0.59 -0.4
5,329,763 + IAI46_24970 0.62 -1.1
5,329,796 + IAI46_24970 0.64 -0.1
5,329,808 + IAI46_24970 0.65 +0.1

Or see this region's nucleotide sequence