Strain Fitness in Serratia liquefaciens MT49 around IAI46_24855

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24845 and IAI46_24850 are separated by 93 nucleotidesIAI46_24850 and IAI46_24855 are separated by 126 nucleotidesIAI46_24855 and IAI46_24860 are separated by 91 nucleotides IAI46_24845: IAI46_24845 - orotate phosphoribosyltransferase, at 5,300,337 to 5,300,978 _24845 IAI46_24850: IAI46_24850 - ribonuclease PH, at 5,301,072 to 5,301,788 _24850 IAI46_24855: IAI46_24855 - YicC family protein, at 5,301,915 to 5,302,778 _24855 IAI46_24860: IAI46_24860 - SDR family oxidoreductase, at 5,302,870 to 5,303,610 _24860 Position (kb) 5301 5302 5303Strain fitness (log2 ratio) -2 -1 0 1 2at 5300.979 kb on + strandat 5300.980 kb on - strandat 5301.005 kb on - strandat 5301.013 kb on + strandat 5301.013 kb on + strandat 5301.014 kb on - strandat 5301.016 kb on + strandat 5301.073 kb on + strandat 5301.110 kb on + strandat 5301.111 kb on - strandat 5301.260 kb on - strand, within IAI46_24850at 5301.260 kb on - strand, within IAI46_24850at 5301.435 kb on + strand, within IAI46_24850at 5301.436 kb on - strand, within IAI46_24850at 5301.436 kb on - strand, within IAI46_24850at 5301.436 kb on - strand, within IAI46_24850at 5301.436 kb on - strand, within IAI46_24850at 5301.660 kb on + strand, within IAI46_24850at 5301.660 kb on + strand, within IAI46_24850at 5301.729 kb on - strandat 5301.730 kb on + strandat 5301.730 kb on + strandat 5301.731 kb on - strandat 5301.731 kb on - strandat 5301.731 kb on - strandat 5301.731 kb on - strandat 5301.807 kb on + strandat 5301.808 kb on - strandat 5301.828 kb on + strandat 5301.831 kb on - strandat 5301.846 kb on + strandat 5301.846 kb on + strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.876 kb on + strandat 5301.876 kb on + strandat 5301.877 kb on - strandat 5301.878 kb on + strandat 5301.897 kb on + strandat 5301.898 kb on - strandat 5301.901 kb on - strandat 5301.936 kb on + strandat 5301.936 kb on + strandat 5301.936 kb on + strandat 5302.005 kb on + strand, within IAI46_24855at 5302.006 kb on - strand, within IAI46_24855at 5302.017 kb on + strand, within IAI46_24855at 5302.017 kb on + strand, within IAI46_24855at 5302.017 kb on + strand, within IAI46_24855at 5302.017 kb on + strand, within IAI46_24855at 5302.018 kb on - strand, within IAI46_24855at 5302.018 kb on - strand, within IAI46_24855at 5302.018 kb on - strand, within IAI46_24855at 5302.233 kb on - strand, within IAI46_24855at 5302.414 kb on + strand, within IAI46_24855at 5302.415 kb on - strand, within IAI46_24855at 5302.547 kb on + strand, within IAI46_24855at 5302.547 kb on + strand, within IAI46_24855at 5302.547 kb on + strand, within IAI46_24855at 5302.548 kb on - strand, within IAI46_24855at 5302.548 kb on - strand, within IAI46_24855at 5302.588 kb on + strand, within IAI46_24855at 5302.589 kb on - strand, within IAI46_24855at 5302.646 kb on + strand, within IAI46_24855at 5302.646 kb on + strand, within IAI46_24855at 5302.646 kb on + strand, within IAI46_24855at 5302.646 kb on + strand, within IAI46_24855at 5302.647 kb on - strand, within IAI46_24855at 5302.647 kb on - strand, within IAI46_24855at 5302.776 kb on + strandat 5302.779 kb on + strandat 5302.779 kb on + strandat 5302.779 kb on + strandat 5302.780 kb on - strandat 5302.780 kb on - strandat 5302.780 kb on - strandat 5302.780 kb on - strandat 5302.798 kb on - strandat 5302.798 kb on - strandat 5302.863 kb on - strandat 5302.872 kb on - strandat 5302.872 kb on - strandat 5302.874 kb on + strandat 5302.874 kb on + strandat 5302.874 kb on + strandat 5302.874 kb on + strandat 5302.874 kb on + strandat 5302.874 kb on + strandat 5302.875 kb on - strandat 5302.875 kb on - strandat 5302.912 kb on - strandat 5303.035 kb on + strand, within IAI46_24860at 5303.036 kb on - strand, within IAI46_24860at 5303.064 kb on + strand, within IAI46_24860at 5303.064 kb on + strand, within IAI46_24860at 5303.065 kb on - strand, within IAI46_24860at 5303.065 kb on - strand, within IAI46_24860at 5303.080 kb on - strand, within IAI46_24860at 5303.080 kb on - strand, within IAI46_24860at 5303.080 kb on - strand, within IAI46_24860at 5303.096 kb on + strand, within IAI46_24860at 5303.097 kb on - strand, within IAI46_24860at 5303.164 kb on - strand, within IAI46_24860at 5303.164 kb on - strand, within IAI46_24860at 5303.167 kb on + strand, within IAI46_24860at 5303.167 kb on + strand, within IAI46_24860at 5303.168 kb on - strand, within IAI46_24860at 5303.200 kb on - strand, within IAI46_24860at 5303.324 kb on - strand, within IAI46_24860at 5303.332 kb on + strand, within IAI46_24860at 5303.378 kb on - strand, within IAI46_24860at 5303.425 kb on + strand, within IAI46_24860at 5303.425 kb on + strand, within IAI46_24860at 5303.425 kb on + strand, within IAI46_24860at 5303.425 kb on + strand, within IAI46_24860at 5303.426 kb on - strand, within IAI46_24860at 5303.426 kb on - strand, within IAI46_24860at 5303.426 kb on - strand, within IAI46_24860at 5303.427 kb on - strand, within IAI46_24860at 5303.445 kb on + strand, within IAI46_24860at 5303.610 kb on + strandat 5303.611 kb on - strandat 5303.611 kb on - strandat 5303.611 kb on - strandat 5303.611 kb on - strandat 5303.611 kb on - strandat 5303.650 kb on + strandat 5303.651 kb on - strandat 5303.688 kb on - strandat 5303.724 kb on + strandat 5303.725 kb on - strandat 5303.725 kb on - strandat 5303.725 kb on - strandat 5303.725 kb on - strandat 5303.725 kb on - strandat 5303.726 kb on + strandat 5303.726 kb on + strandat 5303.727 kb on - strandat 5303.729 kb on + strandat 5303.729 kb on + strandat 5303.729 kb on + strandat 5303.730 kb on - strandat 5303.730 kb on - strandat 5303.730 kb on - strandat 5303.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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5,300,979 + -1.6
5,300,980 - -1.8
5,301,005 - -1.1
5,301,013 + -0.2
5,301,013 + -0.0
5,301,014 - +1.0
5,301,016 + -1.2
5,301,073 + -2.3
5,301,110 + -1.2
5,301,111 - -0.2
5,301,260 - IAI46_24850 0.26 +0.2
5,301,260 - IAI46_24850 0.26 -0.7
5,301,435 + IAI46_24850 0.51 -0.2
5,301,436 - IAI46_24850 0.51 -0.0
5,301,436 - IAI46_24850 0.51 -2.1
5,301,436 - IAI46_24850 0.51 -0.3
5,301,436 - IAI46_24850 0.51 -0.3
5,301,660 + IAI46_24850 0.82 -0.6
5,301,660 + IAI46_24850 0.82 -0.1
5,301,729 - -0.5
5,301,730 + -2.4
5,301,730 + -0.6
5,301,731 - -0.0
5,301,731 - +0.5
5,301,731 - +0.9
5,301,731 - -0.1
5,301,807 + -1.2
5,301,808 - -0.6
5,301,828 + -1.2
5,301,831 - -0.4
5,301,846 + +0.2
5,301,846 + -0.7
5,301,847 - -2.6
5,301,847 - -0.0
5,301,847 - +1.0
5,301,847 - -0.7
5,301,847 - -0.3
5,301,847 - -0.7
5,301,847 - +0.2
5,301,876 + -0.1
5,301,876 + +0.4
5,301,877 - +0.9
5,301,878 + -0.3
5,301,897 + -1.8
5,301,898 - -0.3
5,301,901 - +0.4
5,301,936 + +0.8
5,301,936 + +0.7
5,301,936 + -0.2
5,302,005 + IAI46_24855 0.10 +0.8
5,302,006 - IAI46_24855 0.11 -0.2
5,302,017 + IAI46_24855 0.12 -0.4
5,302,017 + IAI46_24855 0.12 +0.6
5,302,017 + IAI46_24855 0.12 +1.0
5,302,017 + IAI46_24855 0.12 +0.3
5,302,018 - IAI46_24855 0.12 +0.1
5,302,018 - IAI46_24855 0.12 +0.8
5,302,018 - IAI46_24855 0.12 +0.1
5,302,233 - IAI46_24855 0.37 +0.4
5,302,414 + IAI46_24855 0.58 -0.3
5,302,415 - IAI46_24855 0.58 -0.7
5,302,547 + IAI46_24855 0.73 -0.3
5,302,547 + IAI46_24855 0.73 -0.6
5,302,547 + IAI46_24855 0.73 +0.4
5,302,548 - IAI46_24855 0.73 +0.3
5,302,548 - IAI46_24855 0.73 +1.2
5,302,588 + IAI46_24855 0.78 +0.2
5,302,589 - IAI46_24855 0.78 -0.0
5,302,646 + IAI46_24855 0.85 -0.0
5,302,646 + IAI46_24855 0.85 -0.4
5,302,646 + IAI46_24855 0.85 -0.2
5,302,646 + IAI46_24855 0.85 +0.5
5,302,647 - IAI46_24855 0.85 -1.1
5,302,647 - IAI46_24855 0.85 +0.1
5,302,776 + +0.1
5,302,779 + +0.1
5,302,779 + -0.6
5,302,779 + +0.6
5,302,780 - -0.6
5,302,780 - +0.0
5,302,780 - -0.3
5,302,780 - +0.3
5,302,798 - +0.2
5,302,798 - -2.2
5,302,863 - +0.5
5,302,872 - -1.8
5,302,872 - -0.0
5,302,874 + +0.7
5,302,874 + -0.6
5,302,874 + -0.9
5,302,874 + -0.8
5,302,874 + -1.6
5,302,874 + -0.8
5,302,875 - +0.2
5,302,875 - +0.3
5,302,912 - +0.3
5,303,035 + IAI46_24860 0.22 -0.3
5,303,036 - IAI46_24860 0.22 +0.5
5,303,064 + IAI46_24860 0.26 +0.8
5,303,064 + IAI46_24860 0.26 +0.0
5,303,065 - IAI46_24860 0.26 +0.1
5,303,065 - IAI46_24860 0.26 +0.4
5,303,080 - IAI46_24860 0.28 -0.7
5,303,080 - IAI46_24860 0.28 +0.4
5,303,080 - IAI46_24860 0.28 +0.8
5,303,096 + IAI46_24860 0.30 +0.4
5,303,097 - IAI46_24860 0.31 +0.3
5,303,164 - IAI46_24860 0.40 -0.4
5,303,164 - IAI46_24860 0.40 +0.6
5,303,167 + IAI46_24860 0.40 -0.2
5,303,167 + IAI46_24860 0.40 -0.4
5,303,168 - IAI46_24860 0.40 -1.2
5,303,200 - IAI46_24860 0.45 +1.9
5,303,324 - IAI46_24860 0.61 +0.2
5,303,332 + IAI46_24860 0.62 -1.1
5,303,378 - IAI46_24860 0.69 +2.1
5,303,425 + IAI46_24860 0.75 +0.5
5,303,425 + IAI46_24860 0.75 +0.3
5,303,425 + IAI46_24860 0.75 +0.2
5,303,425 + IAI46_24860 0.75 -0.0
5,303,426 - IAI46_24860 0.75 -0.8
5,303,426 - IAI46_24860 0.75 +0.6
5,303,426 - IAI46_24860 0.75 -0.2
5,303,427 - IAI46_24860 0.75 +0.4
5,303,445 + IAI46_24860 0.78 +0.9
5,303,610 + +0.1
5,303,611 - -1.2
5,303,611 - -0.2
5,303,611 - -0.2
5,303,611 - -0.8
5,303,611 - +0.8
5,303,650 + -0.2
5,303,651 - +0.5
5,303,688 - +0.2
5,303,724 + +0.3
5,303,725 - +0.1
5,303,725 - +0.2
5,303,725 - -0.5
5,303,725 - -0.1
5,303,725 - -0.7
5,303,726 + +1.6
5,303,726 + -0.3
5,303,727 - -0.0
5,303,729 + +0.6
5,303,729 + +0.1
5,303,729 + -0.3
5,303,730 - -0.9
5,303,730 - -0.1
5,303,730 - -0.0
5,303,730 - -0.6

Or see this region's nucleotide sequence