Strain Fitness in Serratia liquefaciens MT49 around IAI46_22830

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_22820 and IAI46_22825 overlap by 8 nucleotidesIAI46_22825 and IAI46_22830 are separated by 138 nucleotidesIAI46_22830 and IAI46_22835 are separated by 175 nucleotides IAI46_22820: IAI46_22820 - LrgB family protein, at 4,863,431 to 4,864,120 _22820 IAI46_22825: IAI46_22825 - CidA/LrgA family protein, at 4,864,113 to 4,864,535 _22825 IAI46_22830: IAI46_22830 - LysR family transcriptional regulator, at 4,864,674 to 4,865,576 _22830 IAI46_22835: IAI46_22835 - Na+/H+ antiporter, at 4,865,752 to 4,867,401 _22835 Position (kb) 4864 4865 4866Strain fitness (log2 ratio) -1 0 1 2at 4863.869 kb on - strand, within IAI46_22820at 4863.920 kb on + strand, within IAI46_22820at 4863.921 kb on - strand, within IAI46_22820at 4863.921 kb on - strand, within IAI46_22820at 4863.927 kb on - strand, within IAI46_22820at 4863.927 kb on - strand, within IAI46_22820at 4863.927 kb on - strand, within IAI46_22820at 4863.927 kb on - strand, within IAI46_22820at 4863.951 kb on + strand, within IAI46_22820at 4863.952 kb on - strand, within IAI46_22820at 4863.952 kb on - strand, within IAI46_22820at 4863.952 kb on - strand, within IAI46_22820at 4863.967 kb on + strand, within IAI46_22820at 4863.967 kb on + strand, within IAI46_22820at 4863.967 kb on + strand, within IAI46_22820at 4863.967 kb on + strand, within IAI46_22820at 4863.968 kb on - strand, within IAI46_22820at 4864.033 kb on + strand, within IAI46_22820at 4864.033 kb on + strand, within IAI46_22820at 4864.034 kb on - strand, within IAI46_22820at 4864.034 kb on - strand, within IAI46_22820at 4864.068 kb on + strandat 4864.068 kb on + strandat 4864.068 kb on + strandat 4864.109 kb on - strandat 4864.157 kb on + strand, within IAI46_22825at 4864.158 kb on - strand, within IAI46_22825at 4864.198 kb on - strand, within IAI46_22825at 4864.249 kb on - strand, within IAI46_22825at 4864.261 kb on + strand, within IAI46_22825at 4864.261 kb on + strand, within IAI46_22825at 4864.261 kb on + strand, within IAI46_22825at 4864.261 kb on + strand, within IAI46_22825at 4864.262 kb on - strand, within IAI46_22825at 4864.262 kb on - strand, within IAI46_22825at 4864.262 kb on - strand, within IAI46_22825at 4864.453 kb on - strand, within IAI46_22825at 4864.453 kb on - strand, within IAI46_22825at 4864.462 kb on + strand, within IAI46_22825at 4864.462 kb on + strand, within IAI46_22825at 4864.462 kb on + strand, within IAI46_22825at 4864.463 kb on - strand, within IAI46_22825at 4864.463 kb on - strand, within IAI46_22825at 4864.463 kb on - strand, within IAI46_22825at 4864.464 kb on + strand, within IAI46_22825at 4864.464 kb on + strand, within IAI46_22825at 4864.465 kb on - strand, within IAI46_22825at 4864.530 kb on + strandat 4864.530 kb on + strandat 4864.530 kb on + strandat 4864.548 kb on + strandat 4864.573 kb on + strandat 4864.574 kb on - strandat 4864.574 kb on - strandat 4864.575 kb on + strandat 4864.575 kb on + strandat 4864.575 kb on + strandat 4864.575 kb on + strandat 4864.576 kb on - strandat 4864.576 kb on - strandat 4864.695 kb on + strandat 4864.696 kb on - strandat 4864.696 kb on - strandat 4864.727 kb on + strandat 4864.864 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.867 kb on - strand, within IAI46_22830at 4865.019 kb on + strand, within IAI46_22830at 4865.020 kb on - strand, within IAI46_22830at 4865.110 kb on + strand, within IAI46_22830at 4865.110 kb on + strand, within IAI46_22830at 4865.110 kb on + strand, within IAI46_22830at 4865.111 kb on - strand, within IAI46_22830at 4865.111 kb on - strand, within IAI46_22830at 4865.111 kb on - strand, within IAI46_22830at 4865.111 kb on - strand, within IAI46_22830at 4865.201 kb on + strand, within IAI46_22830at 4865.219 kb on + strand, within IAI46_22830at 4865.253 kb on + strand, within IAI46_22830at 4865.254 kb on - strand, within IAI46_22830at 4865.254 kb on - strand, within IAI46_22830at 4865.255 kb on + strand, within IAI46_22830at 4865.255 kb on + strand, within IAI46_22830at 4865.256 kb on - strand, within IAI46_22830at 4865.256 kb on - strand, within IAI46_22830at 4865.256 kb on - strand, within IAI46_22830at 4865.366 kb on - strand, within IAI46_22830at 4865.497 kb on - strandat 4865.541 kb on + strandat 4865.541 kb on + strandat 4865.574 kb on + strandat 4865.574 kb on + strandat 4865.575 kb on - strandat 4865.575 kb on - strandat 4865.588 kb on + strandat 4865.610 kb on - strandat 4865.620 kb on + strandat 4865.620 kb on + strandat 4865.624 kb on + strandat 4865.624 kb on + strandat 4865.655 kb on + strandat 4865.750 kb on + strandat 4865.751 kb on - strandat 4865.751 kb on - strandat 4865.751 kb on - strandat 4865.751 kb on - strandat 4865.753 kb on + strandat 4865.754 kb on - strandat 4865.754 kb on - strandat 4865.754 kb on - strandat 4865.768 kb on - strandat 4865.768 kb on - strandat 4865.853 kb on - strandat 4865.854 kb on + strandat 4865.854 kb on + strandat 4865.854 kb on + strandat 4865.854 kb on + strandat 4865.854 kb on + strandat 4865.854 kb on + strandat 4865.854 kb on + strandat 4865.855 kb on - strandat 4865.855 kb on - strandat 4865.855 kb on - strandat 4865.875 kb on + strandat 4865.950 kb on - strand, within IAI46_22835at 4866.121 kb on - strand, within IAI46_22835at 4866.219 kb on - strand, within IAI46_22835at 4866.335 kb on + strand, within IAI46_22835at 4866.336 kb on - strand, within IAI46_22835at 4866.366 kb on + strand, within IAI46_22835at 4866.406 kb on - strand, within IAI46_22835at 4866.406 kb on - strand, within IAI46_22835at 4866.431 kb on + strand, within IAI46_22835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
4,863,869 - IAI46_22820 0.63 +0.9
4,863,920 + IAI46_22820 0.71 -1.2
4,863,921 - IAI46_22820 0.71 -0.3
4,863,921 - IAI46_22820 0.71 -0.1
4,863,927 - IAI46_22820 0.72 -0.3
4,863,927 - IAI46_22820 0.72 +1.3
4,863,927 - IAI46_22820 0.72 -1.4
4,863,927 - IAI46_22820 0.72 +0.5
4,863,951 + IAI46_22820 0.75 -0.3
4,863,952 - IAI46_22820 0.76 +0.7
4,863,952 - IAI46_22820 0.76 +0.7
4,863,952 - IAI46_22820 0.76 +0.4
4,863,967 + IAI46_22820 0.78 +0.1
4,863,967 + IAI46_22820 0.78 -0.4
4,863,967 + IAI46_22820 0.78 +0.2
4,863,967 + IAI46_22820 0.78 -0.1
4,863,968 - IAI46_22820 0.78 +0.6
4,864,033 + IAI46_22820 0.87 +1.4
4,864,033 + IAI46_22820 0.87 +1.2
4,864,034 - IAI46_22820 0.87 -0.8
4,864,034 - IAI46_22820 0.87 -0.2
4,864,068 + +0.2
4,864,068 + +1.4
4,864,068 + +0.2
4,864,109 - -1.4
4,864,157 + IAI46_22825 0.10 +0.3
4,864,158 - IAI46_22825 0.11 -0.2
4,864,198 - IAI46_22825 0.20 -0.2
4,864,249 - IAI46_22825 0.32 -0.1
4,864,261 + IAI46_22825 0.35 +0.1
4,864,261 + IAI46_22825 0.35 +0.6
4,864,261 + IAI46_22825 0.35 +0.3
4,864,261 + IAI46_22825 0.35 -0.6
4,864,262 - IAI46_22825 0.35 +0.7
4,864,262 - IAI46_22825 0.35 +0.4
4,864,262 - IAI46_22825 0.35 -1.5
4,864,453 - IAI46_22825 0.80 +0.2
4,864,453 - IAI46_22825 0.80 +0.1
4,864,462 + IAI46_22825 0.83 -0.2
4,864,462 + IAI46_22825 0.83 +0.4
4,864,462 + IAI46_22825 0.83 -0.4
4,864,463 - IAI46_22825 0.83 +0.9
4,864,463 - IAI46_22825 0.83 +0.6
4,864,463 - IAI46_22825 0.83 -0.1
4,864,464 + IAI46_22825 0.83 -0.2
4,864,464 + IAI46_22825 0.83 -0.2
4,864,465 - IAI46_22825 0.83 +0.3
4,864,530 + +0.3
4,864,530 + -0.2
4,864,530 + -0.9
4,864,548 + +0.0
4,864,573 + +0.6
4,864,574 - +0.1
4,864,574 - +0.1
4,864,575 + -0.3
4,864,575 + +1.1
4,864,575 + +1.1
4,864,575 + +0.4
4,864,576 - +2.3
4,864,576 - +0.1
4,864,695 + +0.4
4,864,696 - -0.0
4,864,696 - +0.1
4,864,727 + +0.6
4,864,864 + IAI46_22830 0.21 +0.3
4,864,866 + IAI46_22830 0.21 -0.9
4,864,866 + IAI46_22830 0.21 -1.4
4,864,866 + IAI46_22830 0.21 +1.0
4,864,866 + IAI46_22830 0.21 -0.0
4,864,866 + IAI46_22830 0.21 +0.3
4,864,867 - IAI46_22830 0.21 -0.1
4,865,019 + IAI46_22830 0.38 -0.2
4,865,020 - IAI46_22830 0.38 +0.0
4,865,110 + IAI46_22830 0.48 +0.9
4,865,110 + IAI46_22830 0.48 +1.4
4,865,110 + IAI46_22830 0.48 -0.6
4,865,111 - IAI46_22830 0.48 +0.5
4,865,111 - IAI46_22830 0.48 -0.0
4,865,111 - IAI46_22830 0.48 +1.1
4,865,111 - IAI46_22830 0.48 +0.1
4,865,201 + IAI46_22830 0.58 +0.6
4,865,219 + IAI46_22830 0.60 -0.0
4,865,253 + IAI46_22830 0.64 -0.2
4,865,254 - IAI46_22830 0.64 +1.0
4,865,254 - IAI46_22830 0.64 -0.3
4,865,255 + IAI46_22830 0.64 -0.5
4,865,255 + IAI46_22830 0.64 -0.6
4,865,256 - IAI46_22830 0.64 -0.1
4,865,256 - IAI46_22830 0.64 +1.0
4,865,256 - IAI46_22830 0.64 +0.1
4,865,366 - IAI46_22830 0.77 -0.6
4,865,497 - +0.6
4,865,541 + +0.9
4,865,541 + -0.9
4,865,574 + +0.8
4,865,574 + -0.3
4,865,575 - -0.1
4,865,575 - +0.3
4,865,588 + +0.5
4,865,610 - -0.3
4,865,620 + -0.5
4,865,620 + +0.1
4,865,624 + +0.8
4,865,624 + +0.1
4,865,655 + -0.4
4,865,750 + -0.1
4,865,751 - +0.5
4,865,751 - -0.9
4,865,751 - -0.8
4,865,751 - -0.6
4,865,753 + +0.5
4,865,754 - -0.4
4,865,754 - +0.2
4,865,754 - +0.6
4,865,768 - +0.7
4,865,768 - +0.5
4,865,853 - -1.5
4,865,854 + -0.1
4,865,854 + -0.4
4,865,854 + +0.6
4,865,854 + +0.2
4,865,854 + +0.6
4,865,854 + -0.8
4,865,854 + +0.0
4,865,855 - -0.6
4,865,855 - -0.2
4,865,855 - -1.3
4,865,875 + -0.7
4,865,950 - IAI46_22835 0.12 -0.2
4,866,121 - IAI46_22835 0.22 +0.7
4,866,219 - IAI46_22835 0.28 +0.8
4,866,335 + IAI46_22835 0.35 +0.1
4,866,336 - IAI46_22835 0.35 +0.2
4,866,366 + IAI46_22835 0.37 +0.1
4,866,406 - IAI46_22835 0.40 -0.2
4,866,406 - IAI46_22835 0.40 +0.4
4,866,431 + IAI46_22835 0.41 +1.3

Or see this region's nucleotide sequence