Strain Fitness in Serratia liquefaciens MT49 around IAI46_21095

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_21090 and IAI46_21095 overlap by 4 nucleotidesIAI46_21095 and IAI46_21100 are separated by 170 nucleotidesIAI46_21100 and IAI46_21105 are separated by 24 nucleotides IAI46_21090: IAI46_21090 - FAD-dependent oxidoreductase, at 4,466,222 to 4,467,433 _21090 IAI46_21095: IAI46_21095 - VOC family protein, at 4,467,430 to 4,468,371 _21095 IAI46_21100: IAI46_21100 - IclR family transcriptional regulator, at 4,468,542 to 4,469,336 _21100 IAI46_21105: IAI46_21105 - SDR family oxidoreductase, at 4,469,361 to 4,470,116 _21105 Position (kb) 4467 4468 4469Strain fitness (log2 ratio) -2 -1 0 1 2at 4466.457 kb on + strand, within IAI46_21090at 4466.457 kb on + strand, within IAI46_21090at 4466.457 kb on + strand, within IAI46_21090at 4466.457 kb on + strand, within IAI46_21090at 4466.458 kb on - strand, within IAI46_21090at 4466.458 kb on - strand, within IAI46_21090at 4466.490 kb on + strand, within IAI46_21090at 4466.550 kb on + strand, within IAI46_21090at 4466.551 kb on - strand, within IAI46_21090at 4466.551 kb on - strand, within IAI46_21090at 4467.301 kb on - strand, within IAI46_21090at 4467.310 kb on - strand, within IAI46_21090at 4467.400 kb on + strandat 4467.554 kb on + strand, within IAI46_21095at 4467.555 kb on - strand, within IAI46_21095at 4467.569 kb on + strand, within IAI46_21095at 4467.569 kb on + strand, within IAI46_21095at 4467.569 kb on + strand, within IAI46_21095at 4467.570 kb on - strand, within IAI46_21095at 4467.573 kb on - strand, within IAI46_21095at 4467.614 kb on + strand, within IAI46_21095at 4467.615 kb on - strand, within IAI46_21095at 4467.675 kb on + strand, within IAI46_21095at 4467.675 kb on + strand, within IAI46_21095at 4467.851 kb on - strand, within IAI46_21095at 4467.913 kb on - strand, within IAI46_21095at 4467.935 kb on + strand, within IAI46_21095at 4467.935 kb on + strand, within IAI46_21095at 4467.935 kb on + strand, within IAI46_21095at 4467.936 kb on - strand, within IAI46_21095at 4467.936 kb on - strand, within IAI46_21095at 4467.937 kb on + strand, within IAI46_21095at 4467.992 kb on - strand, within IAI46_21095at 4468.026 kb on + strand, within IAI46_21095at 4468.042 kb on - strand, within IAI46_21095at 4468.056 kb on + strand, within IAI46_21095at 4468.363 kb on + strandat 4468.363 kb on + strandat 4468.477 kb on + strandat 4468.477 kb on + strandat 4468.697 kb on + strand, within IAI46_21100at 4468.756 kb on + strand, within IAI46_21100at 4468.884 kb on + strand, within IAI46_21100at 4468.981 kb on + strand, within IAI46_21100at 4468.981 kb on + strand, within IAI46_21100at 4468.982 kb on - strand, within IAI46_21100at 4469.050 kb on - strand, within IAI46_21100at 4469.090 kb on + strand, within IAI46_21100at 4469.090 kb on + strand, within IAI46_21100at 4469.091 kb on - strand, within IAI46_21100at 4469.092 kb on + strand, within IAI46_21100at 4469.092 kb on + strand, within IAI46_21100at 4469.093 kb on - strand, within IAI46_21100at 4469.252 kb on + strand, within IAI46_21100at 4469.253 kb on - strand, within IAI46_21100at 4469.283 kb on + strandat 4469.283 kb on + strandat 4469.312 kb on - strandat 4469.315 kb on + strandat 4469.316 kb on - strandat 4469.362 kb on + strandat 4469.362 kb on + strandat 4469.362 kb on + strandat 4469.363 kb on - strandat 4469.363 kb on - strandat 4469.366 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
4,466,457 + IAI46_21090 0.19 -0.6
4,466,457 + IAI46_21090 0.19 +0.3
4,466,457 + IAI46_21090 0.19 -0.4
4,466,457 + IAI46_21090 0.19 +0.5
4,466,458 - IAI46_21090 0.19 +2.3
4,466,458 - IAI46_21090 0.19 +0.0
4,466,490 + IAI46_21090 0.22 -0.8
4,466,550 + IAI46_21090 0.27 -0.3
4,466,551 - IAI46_21090 0.27 +0.7
4,466,551 - IAI46_21090 0.27 +0.1
4,467,301 - IAI46_21090 0.89 +1.2
4,467,310 - IAI46_21090 0.90 -1.4
4,467,400 + -0.4
4,467,554 + IAI46_21095 0.13 -0.0
4,467,555 - IAI46_21095 0.13 +0.3
4,467,569 + IAI46_21095 0.15 -0.0
4,467,569 + IAI46_21095 0.15 -0.5
4,467,569 + IAI46_21095 0.15 -0.0
4,467,570 - IAI46_21095 0.15 -0.5
4,467,573 - IAI46_21095 0.15 -1.5
4,467,614 + IAI46_21095 0.20 -0.8
4,467,615 - IAI46_21095 0.20 +0.9
4,467,675 + IAI46_21095 0.26 -0.1
4,467,675 + IAI46_21095 0.26 +0.2
4,467,851 - IAI46_21095 0.45 +0.6
4,467,913 - IAI46_21095 0.51 -0.2
4,467,935 + IAI46_21095 0.54 -0.5
4,467,935 + IAI46_21095 0.54 -0.2
4,467,935 + IAI46_21095 0.54 +0.3
4,467,936 - IAI46_21095 0.54 +0.5
4,467,936 - IAI46_21095 0.54 -1.8
4,467,937 + IAI46_21095 0.54 -0.4
4,467,992 - IAI46_21095 0.60 +1.3
4,468,026 + IAI46_21095 0.63 +0.7
4,468,042 - IAI46_21095 0.65 +0.8
4,468,056 + IAI46_21095 0.66 +1.7
4,468,363 + +0.7
4,468,363 + +0.4
4,468,477 + -0.2
4,468,477 + +0.1
4,468,697 + IAI46_21100 0.19 -0.1
4,468,756 + IAI46_21100 0.27 -0.5
4,468,884 + IAI46_21100 0.43 +0.1
4,468,981 + IAI46_21100 0.55 +0.4
4,468,981 + IAI46_21100 0.55 +0.1
4,468,982 - IAI46_21100 0.55 -0.4
4,469,050 - IAI46_21100 0.64 +0.5
4,469,090 + IAI46_21100 0.69 -0.3
4,469,090 + IAI46_21100 0.69 +0.2
4,469,091 - IAI46_21100 0.69 -1.5
4,469,092 + IAI46_21100 0.69 +1.5
4,469,092 + IAI46_21100 0.69 -0.4
4,469,093 - IAI46_21100 0.69 +0.1
4,469,252 + IAI46_21100 0.89 -1.0
4,469,253 - IAI46_21100 0.89 +0.7
4,469,283 + -0.5
4,469,283 + -0.2
4,469,312 - -1.9
4,469,315 + +0.3
4,469,316 - +2.3
4,469,362 + +1.0
4,469,362 + +2.3
4,469,362 + +0.1
4,469,363 - -1.9
4,469,363 - -0.5
4,469,366 + +0.3

Or see this region's nucleotide sequence