Strain Fitness in Serratia liquefaciens MT49 around IAI46_20960

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20950 and IAI46_20955 are separated by 13 nucleotidesIAI46_20955 and IAI46_20960 are separated by 119 nucleotidesIAI46_20960 and IAI46_20965 overlap by 4 nucleotides IAI46_20950: IAI46_20950 - 3-dehydro-L-gulonate 2-dehydrogenase, at 4,434,623 to 4,435,621 _20950 IAI46_20955: IAI46_20955 - YhcH/YjgK/YiaL family protein, at 4,435,635 to 4,436,105 _20955 IAI46_20960: IAI46_20960 - MFS transporter, at 4,436,225 to 4,437,520 _20960 IAI46_20965: IAI46_20965 - carbohydrate kinase, at 4,437,517 to 4,438,998 _20965 Position (kb) 4436 4437 4438Strain fitness (log2 ratio) -2 -1 0 1 2at 4435.289 kb on + strand, within IAI46_20950at 4435.324 kb on + strand, within IAI46_20950at 4435.391 kb on + strand, within IAI46_20950at 4435.392 kb on - strand, within IAI46_20950at 4435.392 kb on - strand, within IAI46_20950at 4435.392 kb on - strand, within IAI46_20950at 4435.392 kb on - strand, within IAI46_20950at 4435.482 kb on - strand, within IAI46_20950at 4435.482 kb on - strand, within IAI46_20950at 4435.482 kb on - strand, within IAI46_20950at 4435.549 kb on + strandat 4435.550 kb on - strandat 4435.550 kb on - strandat 4435.619 kb on + strandat 4435.639 kb on + strandat 4435.639 kb on + strandat 4435.640 kb on - strandat 4435.640 kb on - strandat 4435.649 kb on + strandat 4435.649 kb on + strandat 4435.658 kb on + strandat 4435.659 kb on - strandat 4435.767 kb on + strand, within IAI46_20955at 4435.767 kb on + strand, within IAI46_20955at 4435.768 kb on - strand, within IAI46_20955at 4435.774 kb on + strand, within IAI46_20955at 4435.947 kb on + strand, within IAI46_20955at 4436.036 kb on + strand, within IAI46_20955at 4436.039 kb on + strand, within IAI46_20955at 4436.040 kb on - strand, within IAI46_20955at 4436.097 kb on - strandat 4436.103 kb on + strandat 4436.209 kb on - strandat 4436.220 kb on + strandat 4436.221 kb on - strandat 4436.221 kb on - strandat 4436.221 kb on - strandat 4436.222 kb on + strandat 4436.222 kb on + strandat 4436.223 kb on - strandat 4436.223 kb on - strandat 4436.223 kb on - strandat 4436.223 kb on - strandat 4436.223 kb on - strandat 4436.223 kb on - strandat 4436.223 kb on - strandat 4436.223 kb on - strandat 4436.230 kb on + strandat 4436.230 kb on + strandat 4436.231 kb on - strandat 4436.231 kb on - strandat 4436.231 kb on - strandat 4436.231 kb on - strandat 4436.289 kb on + strandat 4436.290 kb on - strandat 4436.305 kb on + strandat 4436.305 kb on + strandat 4436.305 kb on + strandat 4436.306 kb on - strandat 4436.306 kb on - strandat 4436.306 kb on - strandat 4436.306 kb on - strandat 4436.306 kb on - strandat 4436.306 kb on - strandat 4436.306 kb on - strandat 4436.308 kb on + strandat 4436.324 kb on + strandat 4436.324 kb on + strandat 4436.325 kb on - strandat 4436.325 kb on - strandat 4436.472 kb on - strand, within IAI46_20960at 4436.556 kb on - strand, within IAI46_20960at 4436.565 kb on + strand, within IAI46_20960at 4436.565 kb on + strand, within IAI46_20960at 4436.676 kb on + strand, within IAI46_20960at 4436.677 kb on - strand, within IAI46_20960at 4436.677 kb on - strand, within IAI46_20960at 4436.677 kb on - strand, within IAI46_20960at 4436.681 kb on - strand, within IAI46_20960at 4436.702 kb on - strand, within IAI46_20960at 4436.804 kb on + strand, within IAI46_20960at 4436.804 kb on + strand, within IAI46_20960at 4436.865 kb on - strand, within IAI46_20960at 4437.002 kb on + strand, within IAI46_20960at 4437.002 kb on + strand, within IAI46_20960at 4437.002 kb on + strand, within IAI46_20960at 4437.003 kb on - strand, within IAI46_20960at 4437.003 kb on - strand, within IAI46_20960at 4437.003 kb on - strand, within IAI46_20960at 4437.089 kb on + strand, within IAI46_20960at 4437.089 kb on + strand, within IAI46_20960at 4437.089 kb on + strand, within IAI46_20960at 4437.090 kb on - strand, within IAI46_20960at 4437.090 kb on - strand, within IAI46_20960at 4437.193 kb on + strand, within IAI46_20960at 4437.194 kb on - strand, within IAI46_20960at 4437.236 kb on + strand, within IAI46_20960at 4437.237 kb on - strand, within IAI46_20960at 4437.387 kb on - strand, within IAI46_20960at 4437.387 kb on - strand, within IAI46_20960at 4437.387 kb on - strand, within IAI46_20960at 4437.387 kb on - strand, within IAI46_20960at 4437.519 kb on - strandat 4437.527 kb on - strandat 4437.574 kb on + strandat 4437.588 kb on + strandat 4437.589 kb on - strandat 4437.601 kb on - strandat 4437.658 kb on - strandat 4438.000 kb on + strand, within IAI46_20965at 4438.000 kb on + strand, within IAI46_20965at 4438.001 kb on - strand, within IAI46_20965at 4438.146 kb on + strand, within IAI46_20965at 4438.309 kb on - strand, within IAI46_20965at 4438.400 kb on - strand, within IAI46_20965at 4438.400 kb on - strand, within IAI46_20965at 4438.400 kb on - strand, within IAI46_20965at 4438.475 kb on - strand, within IAI46_20965at 4438.475 kb on - strand, within IAI46_20965

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,435,289 + IAI46_20950 0.67 -0.1
4,435,324 + IAI46_20950 0.70 -0.7
4,435,391 + IAI46_20950 0.77 -0.1
4,435,392 - IAI46_20950 0.77 +0.2
4,435,392 - IAI46_20950 0.77 -0.1
4,435,392 - IAI46_20950 0.77 -0.2
4,435,392 - IAI46_20950 0.77 +0.9
4,435,482 - IAI46_20950 0.86 +0.0
4,435,482 - IAI46_20950 0.86 -0.6
4,435,482 - IAI46_20950 0.86 +1.1
4,435,549 + +0.9
4,435,550 - +0.2
4,435,550 - +0.4
4,435,619 + +0.3
4,435,639 + -0.2
4,435,639 + -0.8
4,435,640 - -0.0
4,435,640 - -0.1
4,435,649 + +1.3
4,435,649 + +0.1
4,435,658 + -0.5
4,435,659 - -1.0
4,435,767 + IAI46_20955 0.28 -0.9
4,435,767 + IAI46_20955 0.28 +0.9
4,435,768 - IAI46_20955 0.28 +0.4
4,435,774 + IAI46_20955 0.30 +0.5
4,435,947 + IAI46_20955 0.66 +0.5
4,436,036 + IAI46_20955 0.85 +0.9
4,436,039 + IAI46_20955 0.86 +1.5
4,436,040 - IAI46_20955 0.86 -0.0
4,436,097 - -0.3
4,436,103 + +0.2
4,436,209 - -1.0
4,436,220 + +1.0
4,436,221 - +0.8
4,436,221 - -0.6
4,436,221 - -1.3
4,436,222 + -1.7
4,436,222 + -0.9
4,436,223 - +0.9
4,436,223 - -0.7
4,436,223 - +0.1
4,436,223 - +1.2
4,436,223 - +1.2
4,436,223 - +0.7
4,436,223 - -0.3
4,436,223 - +1.1
4,436,230 + +0.6
4,436,230 + +0.3
4,436,231 - +0.5
4,436,231 - +0.4
4,436,231 - +0.3
4,436,231 - +1.3
4,436,289 + +0.2
4,436,290 - +1.6
4,436,305 + +0.6
4,436,305 + +0.6
4,436,305 + +0.5
4,436,306 - +1.8
4,436,306 - +1.2
4,436,306 - +1.1
4,436,306 - -0.0
4,436,306 - +0.4
4,436,306 - +0.5
4,436,306 - -2.3
4,436,308 + +0.5
4,436,324 + -0.5
4,436,324 + -0.1
4,436,325 - -1.0
4,436,325 - +0.2
4,436,472 - IAI46_20960 0.19 -0.4
4,436,556 - IAI46_20960 0.26 +0.1
4,436,565 + IAI46_20960 0.26 +0.9
4,436,565 + IAI46_20960 0.26 -0.4
4,436,676 + IAI46_20960 0.35 -0.2
4,436,677 - IAI46_20960 0.35 +0.4
4,436,677 - IAI46_20960 0.35 +1.2
4,436,677 - IAI46_20960 0.35 +0.4
4,436,681 - IAI46_20960 0.35 +1.0
4,436,702 - IAI46_20960 0.37 -0.0
4,436,804 + IAI46_20960 0.45 +0.3
4,436,804 + IAI46_20960 0.45 -0.6
4,436,865 - IAI46_20960 0.49 -0.5
4,437,002 + IAI46_20960 0.60 +0.2
4,437,002 + IAI46_20960 0.60 -0.5
4,437,002 + IAI46_20960 0.60 +0.2
4,437,003 - IAI46_20960 0.60 -0.2
4,437,003 - IAI46_20960 0.60 -0.1
4,437,003 - IAI46_20960 0.60 -0.2
4,437,089 + IAI46_20960 0.67 +0.5
4,437,089 + IAI46_20960 0.67 -0.6
4,437,089 + IAI46_20960 0.67 +0.9
4,437,090 - IAI46_20960 0.67 +0.8
4,437,090 - IAI46_20960 0.67 +0.6
4,437,193 + IAI46_20960 0.75 -1.3
4,437,194 - IAI46_20960 0.75 +0.0
4,437,236 + IAI46_20960 0.78 +0.4
4,437,237 - IAI46_20960 0.78 -0.5
4,437,387 - IAI46_20960 0.90 -0.2
4,437,387 - IAI46_20960 0.90 +0.5
4,437,387 - IAI46_20960 0.90 +0.6
4,437,387 - IAI46_20960 0.90 -1.3
4,437,519 - +0.3
4,437,527 - -0.4
4,437,574 + +0.1
4,437,588 + +0.2
4,437,589 - +0.4
4,437,601 - +0.1
4,437,658 - -0.7
4,438,000 + IAI46_20965 0.33 -0.0
4,438,000 + IAI46_20965 0.33 -0.4
4,438,001 - IAI46_20965 0.33 +0.2
4,438,146 + IAI46_20965 0.42 +0.7
4,438,309 - IAI46_20965 0.53 +0.1
4,438,400 - IAI46_20965 0.60 +0.0
4,438,400 - IAI46_20965 0.60 +0.9
4,438,400 - IAI46_20965 0.60 +0.5
4,438,475 - IAI46_20965 0.65 +0.1
4,438,475 - IAI46_20965 0.65 +0.0

Or see this region's nucleotide sequence