Strain Fitness in Serratia liquefaciens MT49 around IAI46_20945

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20940 and IAI46_20945 are separated by 12 nucleotidesIAI46_20945 and IAI46_20950 are separated by 261 nucleotides IAI46_20940: IAI46_20940 - substrate-binding domain-containing protein, at 4,432,394 to 4,433,494 _20940 IAI46_20945: IAI46_20945 - SMP-30/gluconolactonase/LRE family protein, at 4,433,507 to 4,434,361 _20945 IAI46_20950: IAI46_20950 - 3-dehydro-L-gulonate 2-dehydrogenase, at 4,434,623 to 4,435,621 _20950 Position (kb) 4433 4434 4435Strain fitness (log2 ratio) -1 0 1at 4432.737 kb on + strand, within IAI46_20940at 4432.738 kb on - strand, within IAI46_20940at 4432.738 kb on - strand, within IAI46_20940at 4432.760 kb on - strand, within IAI46_20940at 4432.803 kb on + strand, within IAI46_20940at 4432.804 kb on - strand, within IAI46_20940at 4432.804 kb on - strand, within IAI46_20940at 4432.804 kb on - strand, within IAI46_20940at 4432.853 kb on + strand, within IAI46_20940at 4432.853 kb on + strand, within IAI46_20940at 4432.865 kb on + strand, within IAI46_20940at 4432.865 kb on + strand, within IAI46_20940at 4432.866 kb on - strand, within IAI46_20940at 4432.866 kb on - strand, within IAI46_20940at 4432.868 kb on - strand, within IAI46_20940at 4432.913 kb on + strand, within IAI46_20940at 4433.114 kb on + strand, within IAI46_20940at 4433.216 kb on + strand, within IAI46_20940at 4433.216 kb on + strand, within IAI46_20940at 4433.372 kb on + strand, within IAI46_20940at 4433.372 kb on + strand, within IAI46_20940at 4433.438 kb on + strandat 4433.438 kb on + strandat 4433.438 kb on + strandat 4433.438 kb on + strandat 4433.439 kb on - strandat 4433.439 kb on - strandat 4433.439 kb on - strandat 4433.439 kb on - strandat 4433.439 kb on - strandat 4433.468 kb on + strandat 4433.469 kb on - strandat 4433.493 kb on - strandat 4433.493 kb on - strandat 4433.493 kb on - strandat 4433.685 kb on - strand, within IAI46_20945at 4433.685 kb on - strand, within IAI46_20945at 4433.838 kb on + strand, within IAI46_20945at 4433.903 kb on + strand, within IAI46_20945at 4433.933 kb on + strand, within IAI46_20945at 4433.933 kb on + strand, within IAI46_20945at 4433.934 kb on - strand, within IAI46_20945at 4433.940 kb on - strand, within IAI46_20945at 4433.940 kb on - strand, within IAI46_20945at 4434.035 kb on + strand, within IAI46_20945at 4434.096 kb on - strand, within IAI46_20945at 4434.216 kb on + strand, within IAI46_20945at 4434.217 kb on - strand, within IAI46_20945at 4434.217 kb on - strand, within IAI46_20945at 4434.314 kb on + strandat 4434.314 kb on + strandat 4434.315 kb on - strandat 4434.315 kb on - strandat 4434.366 kb on - strandat 4434.375 kb on + strandat 4434.376 kb on - strandat 4434.423 kb on - strandat 4434.423 kb on - strandat 4434.541 kb on - strandat 4434.541 kb on - strandat 4434.542 kb on + strandat 4434.636 kb on - strandat 4434.940 kb on - strand, within IAI46_20950at 4435.016 kb on + strand, within IAI46_20950at 4435.016 kb on + strand, within IAI46_20950at 4435.016 kb on + strand, within IAI46_20950at 4435.138 kb on + strand, within IAI46_20950at 4435.138 kb on + strand, within IAI46_20950at 4435.138 kb on + strand, within IAI46_20950at 4435.139 kb on - strand, within IAI46_20950at 4435.139 kb on - strand, within IAI46_20950at 4435.139 kb on - strand, within IAI46_20950at 4435.139 kb on - strand, within IAI46_20950at 4435.160 kb on + strand, within IAI46_20950at 4435.161 kb on - strand, within IAI46_20950at 4435.161 kb on - strand, within IAI46_20950at 4435.161 kb on - strand, within IAI46_20950at 4435.176 kb on + strand, within IAI46_20950at 4435.289 kb on + strand, within IAI46_20950at 4435.324 kb on + strand, within IAI46_20950

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,432,737 + IAI46_20940 0.31 -0.1
4,432,738 - IAI46_20940 0.31 +0.2
4,432,738 - IAI46_20940 0.31 +0.8
4,432,760 - IAI46_20940 0.33 +0.8
4,432,803 + IAI46_20940 0.37 +1.2
4,432,804 - IAI46_20940 0.37 -0.2
4,432,804 - IAI46_20940 0.37 +0.2
4,432,804 - IAI46_20940 0.37 +1.4
4,432,853 + IAI46_20940 0.42 +0.8
4,432,853 + IAI46_20940 0.42 +0.0
4,432,865 + IAI46_20940 0.43 +0.5
4,432,865 + IAI46_20940 0.43 -1.6
4,432,866 - IAI46_20940 0.43 +0.3
4,432,866 - IAI46_20940 0.43 -0.3
4,432,868 - IAI46_20940 0.43 +0.5
4,432,913 + IAI46_20940 0.47 +0.6
4,433,114 + IAI46_20940 0.65 -1.2
4,433,216 + IAI46_20940 0.75 +0.3
4,433,216 + IAI46_20940 0.75 +0.5
4,433,372 + IAI46_20940 0.89 +0.0
4,433,372 + IAI46_20940 0.89 -1.6
4,433,438 + -1.5
4,433,438 + -0.3
4,433,438 + -0.3
4,433,438 + +0.8
4,433,439 - -1.5
4,433,439 - +0.2
4,433,439 - +0.8
4,433,439 - -0.8
4,433,439 - +1.1
4,433,468 + +0.6
4,433,469 - +0.8
4,433,493 - +0.7
4,433,493 - -0.6
4,433,493 - -0.7
4,433,685 - IAI46_20945 0.21 -0.8
4,433,685 - IAI46_20945 0.21 +0.6
4,433,838 + IAI46_20945 0.39 -0.5
4,433,903 + IAI46_20945 0.46 +0.8
4,433,933 + IAI46_20945 0.50 +0.7
4,433,933 + IAI46_20945 0.50 +0.5
4,433,934 - IAI46_20945 0.50 +0.1
4,433,940 - IAI46_20945 0.51 -0.3
4,433,940 - IAI46_20945 0.51 -0.3
4,434,035 + IAI46_20945 0.62 -0.7
4,434,096 - IAI46_20945 0.69 +0.5
4,434,216 + IAI46_20945 0.83 -0.1
4,434,217 - IAI46_20945 0.83 +0.2
4,434,217 - IAI46_20945 0.83 +0.6
4,434,314 + -0.2
4,434,314 + -0.2
4,434,315 - -0.8
4,434,315 - -0.6
4,434,366 - +0.6
4,434,375 + +0.4
4,434,376 - -1.0
4,434,423 - +0.3
4,434,423 - +0.4
4,434,541 - -0.3
4,434,541 - -0.2
4,434,542 + -0.9
4,434,636 - +0.8
4,434,940 - IAI46_20950 0.32 +0.3
4,435,016 + IAI46_20950 0.39 -0.3
4,435,016 + IAI46_20950 0.39 -0.1
4,435,016 + IAI46_20950 0.39 +0.9
4,435,138 + IAI46_20950 0.52 -0.8
4,435,138 + IAI46_20950 0.52 +0.5
4,435,138 + IAI46_20950 0.52 -1.1
4,435,139 - IAI46_20950 0.52 +0.3
4,435,139 - IAI46_20950 0.52 +0.0
4,435,139 - IAI46_20950 0.52 -0.1
4,435,139 - IAI46_20950 0.52 -0.4
4,435,160 + IAI46_20950 0.54 +0.4
4,435,161 - IAI46_20950 0.54 -0.4
4,435,161 - IAI46_20950 0.54 +0.5
4,435,161 - IAI46_20950 0.54 -0.1
4,435,176 + IAI46_20950 0.55 -0.9
4,435,289 + IAI46_20950 0.67 -0.1
4,435,324 + IAI46_20950 0.70 -0.7

Or see this region's nucleotide sequence