Strain Fitness in Serratia liquefaciens MT49 around IAI46_20875

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20870 and IAI46_20875 are separated by 4 nucleotidesIAI46_20875 and IAI46_20880 are separated by 61 nucleotidesIAI46_20880 and IAI46_20885 are separated by 321 nucleotides IAI46_20870: IAI46_20870 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 4,418,472 to 4,419,650 _20870 IAI46_20875: IAI46_20875 - Xaa-Pro aminopeptidase, at 4,419,655 to 4,420,968 _20875 IAI46_20880: IAI46_20880 - YecA family protein, at 4,421,030 to 4,421,608 _20880 IAI46_20885: IAI46_20885 - cell division protein ZapA, at 4,421,930 to 4,422,259 _20885 Position (kb) 4419 4420 4421Strain fitness (log2 ratio) -2 -1 0 1 2at 4419.643 kb on - strandat 4419.933 kb on - strand, within IAI46_20875at 4419.933 kb on - strand, within IAI46_20875at 4420.022 kb on - strand, within IAI46_20875at 4420.107 kb on - strand, within IAI46_20875at 4420.107 kb on - strand, within IAI46_20875at 4420.107 kb on - strand, within IAI46_20875at 4420.107 kb on - strand, within IAI46_20875at 4420.182 kb on - strand, within IAI46_20875at 4420.182 kb on - strand, within IAI46_20875at 4420.182 kb on - strand, within IAI46_20875at 4420.290 kb on - strand, within IAI46_20875at 4420.290 kb on - strand, within IAI46_20875at 4420.575 kb on - strand, within IAI46_20875at 4420.575 kb on - strand, within IAI46_20875at 4420.625 kb on - strand, within IAI46_20875at 4420.824 kb on - strand, within IAI46_20875at 4420.897 kb on - strandat 4421.119 kb on - strand, within IAI46_20880at 4421.176 kb on - strand, within IAI46_20880at 4421.176 kb on - strand, within IAI46_20880at 4421.192 kb on - strand, within IAI46_20880at 4421.458 kb on - strand, within IAI46_20880at 4421.581 kb on - strandat 4421.600 kb on + strandat 4421.601 kb on - strandat 4421.603 kb on - strandat 4421.644 kb on + strandat 4421.645 kb on - strandat 4421.650 kb on - strandat 4421.650 kb on - strandat 4421.650 kb on - strandat 4421.702 kb on + strandat 4421.703 kb on - strandat 4421.703 kb on - strandat 4421.704 kb on + strandat 4421.704 kb on + strandat 4421.704 kb on + strandat 4421.705 kb on - strandat 4421.756 kb on + strandat 4421.756 kb on + strandat 4421.789 kb on + strandat 4421.790 kb on - strandat 4421.790 kb on - strandat 4421.805 kb on - strandat 4421.805 kb on - strandat 4421.809 kb on + strandat 4421.810 kb on - strandat 4421.810 kb on - strandat 4421.810 kb on - strandat 4421.836 kb on + strandat 4421.836 kb on + strandat 4421.836 kb on + strandat 4421.836 kb on + strandat 4421.837 kb on - strandat 4421.837 kb on - strandat 4421.837 kb on - strandat 4421.837 kb on - strandat 4421.852 kb on + strandat 4421.852 kb on + strandat 4421.853 kb on - strandat 4421.853 kb on - strandat 4421.853 kb on - strandat 4421.853 kb on - strandat 4421.854 kb on + strandat 4421.854 kb on + strandat 4421.854 kb on + strandat 4421.854 kb on + strandat 4421.854 kb on + strandat 4421.854 kb on + strandat 4421.854 kb on + strandat 4421.854 kb on + strandat 4421.854 kb on + strandat 4421.855 kb on - strandat 4421.855 kb on - strandat 4421.855 kb on - strandat 4421.855 kb on - strandat 4421.855 kb on - strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.856 kb on + strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.857 kb on - strandat 4421.858 kb on + strandat 4421.858 kb on + strandat 4421.858 kb on + strandat 4421.858 kb on + strandat 4421.858 kb on + strandat 4421.859 kb on - strandat 4421.859 kb on - strandat 4421.859 kb on - strandat 4421.947 kb on - strandat 4421.951 kb on - strandat 4421.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,419,643 - -0.0
4,419,933 - IAI46_20875 0.21 +0.1
4,419,933 - IAI46_20875 0.21 +0.2
4,420,022 - IAI46_20875 0.28 +1.8
4,420,107 - IAI46_20875 0.34 -1.0
4,420,107 - IAI46_20875 0.34 -1.0
4,420,107 - IAI46_20875 0.34 -0.2
4,420,107 - IAI46_20875 0.34 +0.1
4,420,182 - IAI46_20875 0.40 -1.5
4,420,182 - IAI46_20875 0.40 +1.0
4,420,182 - IAI46_20875 0.40 +0.1
4,420,290 - IAI46_20875 0.48 +0.6
4,420,290 - IAI46_20875 0.48 -0.4
4,420,575 - IAI46_20875 0.70 -0.8
4,420,575 - IAI46_20875 0.70 -0.1
4,420,625 - IAI46_20875 0.74 +0.4
4,420,824 - IAI46_20875 0.89 +0.2
4,420,897 - -0.5
4,421,119 - IAI46_20880 0.15 +0.6
4,421,176 - IAI46_20880 0.25 -0.4
4,421,176 - IAI46_20880 0.25 -1.0
4,421,192 - IAI46_20880 0.28 +0.4
4,421,458 - IAI46_20880 0.74 +0.4
4,421,581 - +0.2
4,421,600 + +0.3
4,421,601 - +0.0
4,421,603 - -0.2
4,421,644 + +0.7
4,421,645 - -0.3
4,421,650 - -0.1
4,421,650 - +0.8
4,421,650 - +0.8
4,421,702 + -0.3
4,421,703 - +0.6
4,421,703 - -1.3
4,421,704 + -1.9
4,421,704 + -0.7
4,421,704 + -0.3
4,421,705 - +0.2
4,421,756 + -1.1
4,421,756 + +0.9
4,421,789 + +0.4
4,421,790 - +0.1
4,421,790 - +0.8
4,421,805 - +0.4
4,421,805 - -0.0
4,421,809 + +0.7
4,421,810 - -0.9
4,421,810 - +0.3
4,421,810 - +0.7
4,421,836 + -0.2
4,421,836 + +0.7
4,421,836 + +0.3
4,421,836 + +0.3
4,421,837 - +0.1
4,421,837 - -0.1
4,421,837 - +0.6
4,421,837 - -0.1
4,421,852 + +0.5
4,421,852 + -0.7
4,421,853 - +0.3
4,421,853 - +0.6
4,421,853 - +0.2
4,421,853 - +0.6
4,421,854 + +0.6
4,421,854 + +0.1
4,421,854 + +0.2
4,421,854 + -0.2
4,421,854 + -0.1
4,421,854 + -0.3
4,421,854 + +0.4
4,421,854 + -1.2
4,421,854 + +0.1
4,421,855 - -0.0
4,421,855 - -0.4
4,421,855 - +0.2
4,421,855 - +0.6
4,421,855 - -0.0
4,421,856 + +1.0
4,421,856 + -0.6
4,421,856 + -1.5
4,421,856 + +0.5
4,421,856 + +0.2
4,421,856 + -1.2
4,421,856 + -0.5
4,421,856 + -1.2
4,421,856 + +0.5
4,421,856 + +0.1
4,421,856 + -0.1
4,421,856 + -0.6
4,421,856 + -0.3
4,421,856 + +1.8
4,421,856 + -1.5
4,421,857 - -0.1
4,421,857 - -0.0
4,421,857 - -0.9
4,421,857 - -0.3
4,421,857 - +0.6
4,421,857 - -0.8
4,421,857 - -0.6
4,421,857 - -0.1
4,421,857 - -0.5
4,421,857 - -0.8
4,421,857 - -0.6
4,421,857 - +1.2
4,421,857 - -0.3
4,421,857 - +0.1
4,421,857 - -1.4
4,421,858 + +0.2
4,421,858 + +0.1
4,421,858 + -0.4
4,421,858 + +0.6
4,421,858 + +0.4
4,421,859 - -0.3
4,421,859 - -0.6
4,421,859 - -0.1
4,421,947 - +0.5
4,421,951 - +0.7
4,421,951 - +1.1

Or see this region's nucleotide sequence