Strain Fitness in Serratia liquefaciens MT49 around IAI46_20445

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20435 and IAI46_20440 are separated by 189 nucleotidesIAI46_20440 and IAI46_20445 are separated by 7 nucleotidesIAI46_20445 and IAI46_20450 are separated by 190 nucleotides IAI46_20435: IAI46_20435 - prepilin peptidase-dependent protein, at 4,322,172 to 4,322,678 _20435 IAI46_20440: IAI46_20440 - thymidylate synthase, at 4,322,868 to 4,323,662 _20440 IAI46_20445: IAI46_20445 - prolipoprotein diacylglyceryl transferase, at 4,323,670 to 4,324,542 _20445 IAI46_20450: IAI46_20450 - phosphoenolpyruvate--protein phosphotransferase, at 4,324,733 to 4,326,979 _20450 Position (kb) 4323 4324 4325Strain fitness (log2 ratio) -1 0 1at 4322.690 kb on + strandat 4322.691 kb on - strandat 4322.711 kb on - strandat 4322.754 kb on + strandat 4322.754 kb on + strandat 4322.754 kb on + strandat 4322.755 kb on - strandat 4322.755 kb on - strandat 4322.755 kb on - strandat 4322.800 kb on + strandat 4322.821 kb on + strandat 4322.851 kb on - strandat 4322.855 kb on + strandat 4322.855 kb on + strandat 4322.856 kb on - strandat 4322.856 kb on - strandat 4322.856 kb on - strandat 4324.665 kb on + strandat 4324.665 kb on + strandat 4324.665 kb on + strandat 4324.666 kb on - strandat 4324.671 kb on + strandat 4324.672 kb on - strandat 4324.672 kb on - strandat 4324.864 kb on + strandat 4324.878 kb on + strandat 4324.879 kb on - strandat 4324.897 kb on + strandat 4324.898 kb on - strandat 4324.898 kb on - strandat 4325.081 kb on - strand, within IAI46_20450at 4325.106 kb on + strand, within IAI46_20450at 4325.107 kb on - strand, within IAI46_20450at 4325.137 kb on + strand, within IAI46_20450at 4325.443 kb on + strand, within IAI46_20450at 4325.449 kb on + strand, within IAI46_20450at 4325.449 kb on + strand, within IAI46_20450at 4325.449 kb on + strand, within IAI46_20450at 4325.449 kb on + strand, within IAI46_20450at 4325.449 kb on + strand, within IAI46_20450at 4325.449 kb on + strand, within IAI46_20450at 4325.449 kb on + strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.450 kb on - strand, within IAI46_20450at 4325.451 kb on + strand, within IAI46_20450at 4325.451 kb on + strand, within IAI46_20450at 4325.451 kb on + strand, within IAI46_20450at 4325.451 kb on + strand, within IAI46_20450at 4325.451 kb on + strand, within IAI46_20450at 4325.451 kb on + strand, within IAI46_20450at 4325.452 kb on - strand, within IAI46_20450at 4325.452 kb on - strand, within IAI46_20450at 4325.452 kb on - strand, within IAI46_20450at 4325.464 kb on + strand, within IAI46_20450at 4325.524 kb on + strand, within IAI46_20450at 4325.524 kb on + strand, within IAI46_20450at 4325.532 kb on + strand, within IAI46_20450at 4325.532 kb on + strand, within IAI46_20450at 4325.533 kb on - strand, within IAI46_20450

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,322,690 + -0.0
4,322,691 - -0.6
4,322,711 - +0.6
4,322,754 + +0.4
4,322,754 + -0.4
4,322,754 + -0.5
4,322,755 - -0.0
4,322,755 - +0.5
4,322,755 - +0.4
4,322,800 + +0.7
4,322,821 + +0.7
4,322,851 - +0.2
4,322,855 + -1.5
4,322,855 + -0.9
4,322,856 - +0.0
4,322,856 - +1.0
4,322,856 - -0.0
4,324,665 + -0.3
4,324,665 + -0.3
4,324,665 + -0.3
4,324,666 - +0.4
4,324,671 + -0.2
4,324,672 - +0.0
4,324,672 - -1.6
4,324,864 + +0.7
4,324,878 + +0.3
4,324,879 - -0.1
4,324,897 + -0.2
4,324,898 - +0.2
4,324,898 - -1.3
4,325,081 - IAI46_20450 0.15 +0.6
4,325,106 + IAI46_20450 0.17 +0.2
4,325,107 - IAI46_20450 0.17 +0.2
4,325,137 + IAI46_20450 0.18 +0.7
4,325,443 + IAI46_20450 0.32 +1.1
4,325,449 + IAI46_20450 0.32 -0.5
4,325,449 + IAI46_20450 0.32 -0.9
4,325,449 + IAI46_20450 0.32 -0.7
4,325,449 + IAI46_20450 0.32 -0.6
4,325,449 + IAI46_20450 0.32 +0.9
4,325,449 + IAI46_20450 0.32 -0.2
4,325,449 + IAI46_20450 0.32 -0.2
4,325,450 - IAI46_20450 0.32 -0.1
4,325,450 - IAI46_20450 0.32 +0.2
4,325,450 - IAI46_20450 0.32 +0.1
4,325,450 - IAI46_20450 0.32 -0.4
4,325,450 - IAI46_20450 0.32 +0.2
4,325,450 - IAI46_20450 0.32 +0.6
4,325,450 - IAI46_20450 0.32 +0.4
4,325,450 - IAI46_20450 0.32 -1.2
4,325,450 - IAI46_20450 0.32 -0.2
4,325,451 + IAI46_20450 0.32 -0.2
4,325,451 + IAI46_20450 0.32 -0.3
4,325,451 + IAI46_20450 0.32 +0.8
4,325,451 + IAI46_20450 0.32 +1.1
4,325,451 + IAI46_20450 0.32 -1.5
4,325,451 + IAI46_20450 0.32 +0.1
4,325,452 - IAI46_20450 0.32 -0.0
4,325,452 - IAI46_20450 0.32 +0.3
4,325,452 - IAI46_20450 0.32 +1.1
4,325,464 + IAI46_20450 0.33 -0.6
4,325,524 + IAI46_20450 0.35 +0.9
4,325,524 + IAI46_20450 0.35 +0.8
4,325,532 + IAI46_20450 0.36 +1.1
4,325,532 + IAI46_20450 0.36 +0.8
4,325,533 - IAI46_20450 0.36 -0.5

Or see this region's nucleotide sequence