Strain Fitness in Serratia liquefaciens MT49 around IAI46_18855

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18845 and IAI46_18850 are separated by 441 nucleotidesIAI46_18850 and IAI46_18855 are separated by 16 nucleotidesIAI46_18855 and IAI46_18860 overlap by 31 nucleotidesIAI46_18860 and IAI46_18865 are separated by 109 nucleotidesIAI46_18865 and IAI46_18870 are separated by 28 nucleotides IAI46_18845: IAI46_18845 - arsenate reductase (glutaredoxin), at 3,968,328 to 3,968,681 _18845 IAI46_18850: IAI46_18850 - DNA-binding protein, at 3,969,123 to 3,969,662 _18850 IAI46_18855: IAI46_18855 - DnaA inactivator Hda, at 3,969,679 to 3,970,380 _18855 IAI46_18860: IAI46_18860 - hypothetical protein, at 3,970,350 to 3,970,499 _18860 IAI46_18865: IAI46_18865 - E3 ubiquitin--protein ligase, at 3,970,609 to 3,971,124 _18865 IAI46_18870: IAI46_18870 - GlsB/YeaQ/YmgE family stress response membrane protein, at 3,971,153 to 3,971,401 _18870 Position (kb) 3969 3970 3971Strain fitness (log2 ratio) -2 -1 0 1 2at 3968.696 kb on + strandat 3968.696 kb on + strandat 3968.709 kb on + strandat 3968.710 kb on - strandat 3968.710 kb on - strandat 3968.710 kb on - strandat 3968.710 kb on - strandat 3968.717 kb on + strandat 3968.790 kb on + strandat 3968.790 kb on + strandat 3968.794 kb on - strandat 3968.794 kb on - strandat 3968.849 kb on - strandat 3968.854 kb on - strandat 3968.896 kb on - strandat 3968.896 kb on - strandat 3968.896 kb on - strandat 3968.905 kb on - strandat 3968.905 kb on - strandat 3968.945 kb on + strandat 3968.945 kb on + strandat 3969.012 kb on + strandat 3969.012 kb on + strandat 3969.012 kb on + strandat 3969.012 kb on + strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.021 kb on + strandat 3969.021 kb on + strandat 3969.021 kb on + strandat 3969.022 kb on - strandat 3969.122 kb on + strandat 3969.337 kb on + strand, within IAI46_18850at 3969.337 kb on + strand, within IAI46_18850at 3969.338 kb on - strand, within IAI46_18850at 3969.361 kb on + strand, within IAI46_18850at 3969.367 kb on + strand, within IAI46_18850at 3969.367 kb on + strand, within IAI46_18850at 3969.367 kb on + strand, within IAI46_18850at 3969.367 kb on + strand, within IAI46_18850at 3969.428 kb on + strand, within IAI46_18850at 3969.500 kb on + strand, within IAI46_18850at 3969.501 kb on - strand, within IAI46_18850at 3969.565 kb on - strand, within IAI46_18850at 3969.630 kb on + strandat 3969.630 kb on + strandat 3969.630 kb on + strandat 3969.630 kb on + strandat 3969.630 kb on + strandat 3969.631 kb on - strandat 3969.631 kb on - strandat 3969.631 kb on - strandat 3969.631 kb on - strandat 3969.631 kb on - strandat 3969.631 kb on - strandat 3969.631 kb on - strandat 3969.634 kb on + strandat 3969.680 kb on + strandat 3970.248 kb on - strand, within IAI46_18855at 3970.417 kb on + strand, within IAI46_18860at 3970.551 kb on + strandat 3970.551 kb on + strandat 3970.551 kb on + strandat 3970.552 kb on - strandat 3970.554 kb on + strandat 3970.554 kb on + strandat 3970.554 kb on + strandat 3970.556 kb on + strandat 3970.556 kb on + strandat 3970.556 kb on + strandat 3970.557 kb on - strandat 3970.557 kb on - strandat 3970.580 kb on + strandat 3970.593 kb on + strandat 3970.602 kb on - strandat 3970.602 kb on - strandat 3970.603 kb on + strandat 3970.603 kb on + strandat 3970.604 kb on - strandat 3970.623 kb on + strandat 3970.653 kb on - strandat 3970.968 kb on + strand, within IAI46_18865at 3971.100 kb on + strandat 3971.123 kb on - strandat 3971.123 kb on - strandat 3971.123 kb on - strandat 3971.125 kb on + strandat 3971.125 kb on + strandat 3971.129 kb on + strandat 3971.130 kb on - strandat 3971.130 kb on - strandat 3971.135 kb on + strandat 3971.151 kb on - strandat 3971.173 kb on + strandat 3971.174 kb on - strandat 3971.239 kb on + strand, within IAI46_18870at 3971.240 kb on - strand, within IAI46_18870at 3971.285 kb on + strand, within IAI46_18870at 3971.286 kb on - strand, within IAI46_18870at 3971.287 kb on + strand, within IAI46_18870at 3971.287 kb on + strand, within IAI46_18870at 3971.287 kb on + strand, within IAI46_18870at 3971.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,968,696 + -0.7
3,968,696 + +0.2
3,968,709 + +0.2
3,968,710 - +0.3
3,968,710 - +0.5
3,968,710 - -2.3
3,968,710 - -0.5
3,968,717 + -1.0
3,968,790 + +0.1
3,968,790 + -2.3
3,968,794 - +0.3
3,968,794 - -0.7
3,968,849 - -0.3
3,968,854 - -0.2
3,968,896 - +0.4
3,968,896 - +0.0
3,968,896 - +0.4
3,968,905 - +0.1
3,968,905 - -0.6
3,968,945 + +0.3
3,968,945 + -1.6
3,969,012 + +0.6
3,969,012 + +0.5
3,969,012 + +0.9
3,969,012 + +0.2
3,969,013 - +2.4
3,969,013 - -1.7
3,969,013 - +0.3
3,969,013 - -0.5
3,969,013 - -0.4
3,969,013 - -0.3
3,969,021 + -0.6
3,969,021 + -0.9
3,969,021 + +0.3
3,969,022 - +1.0
3,969,122 + +0.9
3,969,337 + IAI46_18850 0.40 -0.8
3,969,337 + IAI46_18850 0.40 +0.2
3,969,338 - IAI46_18850 0.40 +0.7
3,969,361 + IAI46_18850 0.44 +0.2
3,969,367 + IAI46_18850 0.45 +0.3
3,969,367 + IAI46_18850 0.45 -0.1
3,969,367 + IAI46_18850 0.45 +0.9
3,969,367 + IAI46_18850 0.45 +0.2
3,969,428 + IAI46_18850 0.56 +0.7
3,969,500 + IAI46_18850 0.70 +0.6
3,969,501 - IAI46_18850 0.70 +0.1
3,969,565 - IAI46_18850 0.82 +0.4
3,969,630 + -0.1
3,969,630 + +1.6
3,969,630 + -0.7
3,969,630 + -0.4
3,969,630 + -0.5
3,969,631 - +0.4
3,969,631 - -0.6
3,969,631 - -0.0
3,969,631 - -0.1
3,969,631 - -0.7
3,969,631 - +0.0
3,969,631 - -0.5
3,969,634 + +0.1
3,969,680 + -0.5
3,970,248 - IAI46_18855 0.81 +0.1
3,970,417 + IAI46_18860 0.45 +0.1
3,970,551 + -0.0
3,970,551 + -0.9
3,970,551 + +0.5
3,970,552 - +0.1
3,970,554 + +0.3
3,970,554 + -1.2
3,970,554 + +1.0
3,970,556 + +0.7
3,970,556 + -1.0
3,970,556 + +0.0
3,970,557 - -1.1
3,970,557 - +0.7
3,970,580 + +0.4
3,970,593 + +0.7
3,970,602 - -0.8
3,970,602 - +0.1
3,970,603 + -0.0
3,970,603 + -0.6
3,970,604 - +0.5
3,970,623 + +0.2
3,970,653 - -0.2
3,970,968 + IAI46_18865 0.70 +0.1
3,971,100 + +2.3
3,971,123 - +1.8
3,971,123 - -1.5
3,971,123 - +0.3
3,971,125 + +0.1
3,971,125 + +0.1
3,971,129 + -0.1
3,971,130 - +1.1
3,971,130 - -0.9
3,971,135 + +0.4
3,971,151 - -0.1
3,971,173 + -0.5
3,971,174 - +0.1
3,971,239 + IAI46_18870 0.35 +0.4
3,971,240 - IAI46_18870 0.35 +1.7
3,971,285 + IAI46_18870 0.53 +0.6
3,971,286 - IAI46_18870 0.53 -0.7
3,971,287 + IAI46_18870 0.54 +0.1
3,971,287 + IAI46_18870 0.54 -1.0
3,971,287 + IAI46_18870 0.54 +0.8
3,971,379 + +0.6

Or see this region's nucleotide sequence