Strain Fitness in Serratia liquefaciens MT49 around IAI46_18655

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18645 and IAI46_18650 are separated by 131 nucleotidesIAI46_18650 and IAI46_18655 are separated by 11 nucleotidesIAI46_18655 and IAI46_18660 are separated by 54 nucleotides IAI46_18645: IAI46_18645 - GDP-mannose pyrophosphatase NudK, at 3,926,679 to 3,927,254 _18645 IAI46_18650: IAI46_18650 - cytochrome c-type protein NapC, at 3,927,386 to 3,928,003 _18650 IAI46_18655: IAI46_18655 - nitrate reductase cytochrome c-type subunit, at 3,928,015 to 3,928,464 _18655 IAI46_18660: IAI46_18660 - nitrate reductase catalytic subunit NapA, at 3,928,519 to 3,931,005 _18660 Position (kb) 3928 3929Strain fitness (log2 ratio) -1 0 1 2 3at 3927.043 kb on + strand, within IAI46_18645at 3927.043 kb on + strand, within IAI46_18645at 3927.043 kb on + strand, within IAI46_18645at 3927.044 kb on - strand, within IAI46_18645at 3927.131 kb on - strand, within IAI46_18645at 3927.167 kb on + strand, within IAI46_18645at 3927.186 kb on - strand, within IAI46_18645at 3927.188 kb on - strand, within IAI46_18645at 3927.188 kb on - strand, within IAI46_18645at 3927.202 kb on + strandat 3927.202 kb on + strandat 3927.203 kb on - strandat 3927.203 kb on - strandat 3927.209 kb on + strandat 3927.524 kb on - strand, within IAI46_18650at 3927.526 kb on - strand, within IAI46_18650at 3927.526 kb on - strand, within IAI46_18650at 3927.526 kb on - strand, within IAI46_18650at 3927.658 kb on - strand, within IAI46_18650at 3927.658 kb on - strand, within IAI46_18650at 3927.658 kb on - strand, within IAI46_18650at 3927.677 kb on + strand, within IAI46_18650at 3927.760 kb on - strand, within IAI46_18650at 3927.760 kb on - strand, within IAI46_18650at 3927.760 kb on - strand, within IAI46_18650at 3927.778 kb on - strand, within IAI46_18650at 3927.778 kb on - strand, within IAI46_18650at 3927.947 kb on + strandat 3927.953 kb on + strandat 3928.003 kb on + strandat 3928.003 kb on + strandat 3928.004 kb on - strandat 3928.004 kb on - strandat 3928.004 kb on - strandat 3928.081 kb on + strand, within IAI46_18655at 3928.104 kb on - strand, within IAI46_18655at 3928.104 kb on - strand, within IAI46_18655at 3928.150 kb on - strand, within IAI46_18655at 3928.150 kb on - strand, within IAI46_18655at 3928.150 kb on - strand, within IAI46_18655at 3928.418 kb on - strand, within IAI46_18655at 3928.468 kb on + strandat 3928.486 kb on + strandat 3928.566 kb on + strandat 3928.566 kb on + strandat 3928.566 kb on + strandat 3928.567 kb on - strandat 3928.567 kb on - strandat 3928.634 kb on + strandat 3928.634 kb on + strandat 3928.635 kb on - strandat 3928.635 kb on - strandat 3928.635 kb on - strandat 3928.635 kb on - strandat 3928.687 kb on + strandat 3928.688 kb on - strandat 3928.843 kb on + strand, within IAI46_18660at 3928.844 kb on - strand, within IAI46_18660at 3928.872 kb on - strand, within IAI46_18660at 3928.942 kb on - strand, within IAI46_18660at 3928.946 kb on + strand, within IAI46_18660at 3928.976 kb on + strand, within IAI46_18660at 3928.976 kb on + strand, within IAI46_18660at 3928.977 kb on - strand, within IAI46_18660at 3929.057 kb on + strand, within IAI46_18660at 3929.057 kb on + strand, within IAI46_18660at 3929.108 kb on + strand, within IAI46_18660at 3929.108 kb on + strand, within IAI46_18660at 3929.109 kb on - strand, within IAI46_18660at 3929.135 kb on + strand, within IAI46_18660at 3929.136 kb on - strand, within IAI46_18660at 3929.195 kb on + strand, within IAI46_18660at 3929.195 kb on + strand, within IAI46_18660at 3929.199 kb on + strand, within IAI46_18660at 3929.200 kb on - strand, within IAI46_18660at 3929.231 kb on + strand, within IAI46_18660at 3929.231 kb on + strand, within IAI46_18660at 3929.231 kb on + strand, within IAI46_18660at 3929.231 kb on + strand, within IAI46_18660at 3929.232 kb on - strand, within IAI46_18660at 3929.383 kb on - strand, within IAI46_18660at 3929.455 kb on + strand, within IAI46_18660

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,927,043 + IAI46_18645 0.63 -0.6
3,927,043 + IAI46_18645 0.63 -0.2
3,927,043 + IAI46_18645 0.63 +1.4
3,927,044 - IAI46_18645 0.63 +0.6
3,927,131 - IAI46_18645 0.78 +0.2
3,927,167 + IAI46_18645 0.85 -0.0
3,927,186 - IAI46_18645 0.88 +1.0
3,927,188 - IAI46_18645 0.88 -1.3
3,927,188 - IAI46_18645 0.88 +0.4
3,927,202 + -1.2
3,927,202 + +0.5
3,927,203 - +1.3
3,927,203 - +0.4
3,927,209 + +1.3
3,927,524 - IAI46_18650 0.22 +0.9
3,927,526 - IAI46_18650 0.23 +0.6
3,927,526 - IAI46_18650 0.23 -0.9
3,927,526 - IAI46_18650 0.23 +0.5
3,927,658 - IAI46_18650 0.44 +0.2
3,927,658 - IAI46_18650 0.44 -0.1
3,927,658 - IAI46_18650 0.44 +0.1
3,927,677 + IAI46_18650 0.47 +0.6
3,927,760 - IAI46_18650 0.61 -0.5
3,927,760 - IAI46_18650 0.61 +0.0
3,927,760 - IAI46_18650 0.61 +1.1
3,927,778 - IAI46_18650 0.63 +0.5
3,927,778 - IAI46_18650 0.63 +0.4
3,927,947 + -0.2
3,927,953 + -0.3
3,928,003 + -0.5
3,928,003 + -0.1
3,928,004 - +3.1
3,928,004 - +0.4
3,928,004 - +0.6
3,928,081 + IAI46_18655 0.15 +0.5
3,928,104 - IAI46_18655 0.20 +0.4
3,928,104 - IAI46_18655 0.20 +0.5
3,928,150 - IAI46_18655 0.30 +0.6
3,928,150 - IAI46_18655 0.30 +0.3
3,928,150 - IAI46_18655 0.30 +0.9
3,928,418 - IAI46_18655 0.90 +0.8
3,928,468 + -0.4
3,928,486 + -0.7
3,928,566 + +0.3
3,928,566 + +0.1
3,928,566 + +0.4
3,928,567 - -0.7
3,928,567 - +0.3
3,928,634 + +1.2
3,928,634 + -0.8
3,928,635 - +0.3
3,928,635 - -0.2
3,928,635 - +0.6
3,928,635 - +0.3
3,928,687 + +0.4
3,928,688 - +1.7
3,928,843 + IAI46_18660 0.13 -1.0
3,928,844 - IAI46_18660 0.13 +1.0
3,928,872 - IAI46_18660 0.14 -0.6
3,928,942 - IAI46_18660 0.17 -0.2
3,928,946 + IAI46_18660 0.17 +1.1
3,928,976 + IAI46_18660 0.18 +0.5
3,928,976 + IAI46_18660 0.18 +0.5
3,928,977 - IAI46_18660 0.18 +0.6
3,929,057 + IAI46_18660 0.22 +0.4
3,929,057 + IAI46_18660 0.22 +0.5
3,929,108 + IAI46_18660 0.24 +1.1
3,929,108 + IAI46_18660 0.24 +0.9
3,929,109 - IAI46_18660 0.24 +0.7
3,929,135 + IAI46_18660 0.25 +0.7
3,929,136 - IAI46_18660 0.25 +0.7
3,929,195 + IAI46_18660 0.27 -0.5
3,929,195 + IAI46_18660 0.27 -1.0
3,929,199 + IAI46_18660 0.27 +0.1
3,929,200 - IAI46_18660 0.27 -0.0
3,929,231 + IAI46_18660 0.29 +0.0
3,929,231 + IAI46_18660 0.29 +1.1
3,929,231 + IAI46_18660 0.29 -1.0
3,929,231 + IAI46_18660 0.29 +0.3
3,929,232 - IAI46_18660 0.29 +1.1
3,929,383 - IAI46_18660 0.35 -0.0
3,929,455 + IAI46_18660 0.38 -1.3

Or see this region's nucleotide sequence