Strain Fitness in Serratia liquefaciens MT49 around IAI46_17450

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17445 and IAI46_17450 overlap by 8 nucleotidesIAI46_17450 and IAI46_17455 are separated by 50 nucleotides IAI46_17445: IAI46_17445 - phosphotransferase RcsD, at 3,661,832 to 3,664,534 _17445 IAI46_17450: IAI46_17450 - transcriptional regulator RcsB, at 3,664,527 to 3,665,177 _17450 IAI46_17455: IAI46_17455 - two-component system sensor histidine kinase RcsC, at 3,665,228 to 3,668,098 _17455 Position (kb) 3664 3665 3666Strain fitness (log2 ratio) -2 -1 0 1at 3663.568 kb on + strand, within IAI46_17445at 3663.696 kb on - strand, within IAI46_17445at 3663.731 kb on - strand, within IAI46_17445at 3663.731 kb on - strand, within IAI46_17445at 3663.772 kb on - strand, within IAI46_17445at 3663.831 kb on - strand, within IAI46_17445at 3663.843 kb on + strand, within IAI46_17445at 3663.966 kb on - strand, within IAI46_17445at 3664.055 kb on + strand, within IAI46_17445at 3664.124 kb on + strand, within IAI46_17445at 3664.124 kb on + strand, within IAI46_17445at 3664.147 kb on - strand, within IAI46_17445at 3664.266 kb on - strandat 3664.389 kb on + strandat 3664.468 kb on + strandat 3664.516 kb on + strandat 3664.517 kb on - strandat 3664.532 kb on + strandat 3664.543 kb on + strandat 3664.547 kb on + strandat 3664.565 kb on + strandat 3664.566 kb on - strandat 3664.566 kb on - strandat 3664.716 kb on + strand, within IAI46_17450at 3664.730 kb on + strand, within IAI46_17450at 3664.743 kb on + strand, within IAI46_17450at 3664.847 kb on - strand, within IAI46_17450at 3665.136 kb on + strandat 3665.175 kb on + strandat 3665.176 kb on - strandat 3665.179 kb on + strandat 3665.180 kb on - strandat 3665.180 kb on - strandat 3665.229 kb on + strandat 3665.230 kb on - strandat 3665.275 kb on - strandat 3665.329 kb on + strandat 3665.347 kb on + strandat 3665.347 kb on + strandat 3665.348 kb on - strandat 3665.439 kb on + strandat 3665.459 kb on - strandat 3665.474 kb on + strandat 3665.501 kb on + strandat 3665.501 kb on + strandat 3665.501 kb on + strandat 3665.557 kb on + strand, within IAI46_17455at 3665.557 kb on + strand, within IAI46_17455at 3665.558 kb on - strand, within IAI46_17455at 3665.610 kb on - strand, within IAI46_17455at 3665.610 kb on - strand, within IAI46_17455at 3665.671 kb on + strand, within IAI46_17455at 3665.754 kb on + strand, within IAI46_17455at 3665.892 kb on - strand, within IAI46_17455at 3665.892 kb on - strand, within IAI46_17455at 3665.892 kb on - strand, within IAI46_17455at 3665.931 kb on + strand, within IAI46_17455at 3665.986 kb on + strand, within IAI46_17455at 3666.031 kb on + strand, within IAI46_17455at 3666.032 kb on - strand, within IAI46_17455

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,663,568 + IAI46_17445 0.64 +1.0
3,663,696 - IAI46_17445 0.69 +0.1
3,663,731 - IAI46_17445 0.70 +1.1
3,663,731 - IAI46_17445 0.70 -0.1
3,663,772 - IAI46_17445 0.72 +0.2
3,663,831 - IAI46_17445 0.74 -0.5
3,663,843 + IAI46_17445 0.74 -0.2
3,663,966 - IAI46_17445 0.79 -1.0
3,664,055 + IAI46_17445 0.82 -0.9
3,664,124 + IAI46_17445 0.85 +0.5
3,664,124 + IAI46_17445 0.85 -0.4
3,664,147 - IAI46_17445 0.86 +0.2
3,664,266 - -0.8
3,664,389 + -0.9
3,664,468 + -0.2
3,664,516 + +1.6
3,664,517 - -0.5
3,664,532 + -0.8
3,664,543 + +0.1
3,664,547 + -1.0
3,664,565 + -0.0
3,664,566 - -0.5
3,664,566 - -0.4
3,664,716 + IAI46_17450 0.29 +1.1
3,664,730 + IAI46_17450 0.31 -0.5
3,664,743 + IAI46_17450 0.33 +0.4
3,664,847 - IAI46_17450 0.49 -0.6
3,665,136 + +0.4
3,665,175 + -0.2
3,665,176 - -1.3
3,665,179 + -0.5
3,665,180 - -0.6
3,665,180 - +0.0
3,665,229 + +0.1
3,665,230 - -0.7
3,665,275 - -0.4
3,665,329 + +0.4
3,665,347 + -0.4
3,665,347 + +0.1
3,665,348 - -0.2
3,665,439 + -0.2
3,665,459 - +0.4
3,665,474 + +0.6
3,665,501 + +0.7
3,665,501 + +0.2
3,665,501 + +0.7
3,665,557 + IAI46_17455 0.11 -0.5
3,665,557 + IAI46_17455 0.11 -0.2
3,665,558 - IAI46_17455 0.11 +1.4
3,665,610 - IAI46_17455 0.13 +0.2
3,665,610 - IAI46_17455 0.13 -0.1
3,665,671 + IAI46_17455 0.15 -0.2
3,665,754 + IAI46_17455 0.18 +1.0
3,665,892 - IAI46_17455 0.23 +0.7
3,665,892 - IAI46_17455 0.23 -0.8
3,665,892 - IAI46_17455 0.23 +0.2
3,665,931 + IAI46_17455 0.24 +0.2
3,665,986 + IAI46_17455 0.26 -0.1
3,666,031 + IAI46_17455 0.28 -0.8
3,666,032 - IAI46_17455 0.28 -1.8

Or see this region's nucleotide sequence