Strain Fitness in Serratia liquefaciens MT49 around IAI46_16850

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16845 and IAI46_16850 are separated by 121 nucleotidesIAI46_16850 and IAI46_16855 are separated by 147 nucleotides IAI46_16845: IAI46_16845 - LysR family transcriptional regulator, at 3,531,109 to 3,531,990 _16845 IAI46_16850: IAI46_16850 - flavodoxin family protein, at 3,532,112 to 3,532,747 _16850 IAI46_16855: IAI46_16855 - glycosyltransferase family 9 protein, at 3,532,895 to 3,534,001 _16855 Position (kb) 3532 3533Strain fitness (log2 ratio) -2 -1 0 1at 3531.246 kb on + strand, within IAI46_16845at 3531.321 kb on - strand, within IAI46_16845at 3531.335 kb on + strand, within IAI46_16845at 3531.336 kb on - strand, within IAI46_16845at 3531.336 kb on - strand, within IAI46_16845at 3531.558 kb on + strand, within IAI46_16845at 3531.559 kb on - strand, within IAI46_16845at 3531.568 kb on + strand, within IAI46_16845at 3531.627 kb on - strand, within IAI46_16845at 3531.636 kb on - strand, within IAI46_16845at 3531.871 kb on + strand, within IAI46_16845at 3531.871 kb on + strand, within IAI46_16845at 3532.051 kb on + strandat 3532.051 kb on + strandat 3532.052 kb on - strandat 3532.088 kb on - strandat 3532.248 kb on + strand, within IAI46_16850at 3532.256 kb on + strand, within IAI46_16850at 3532.373 kb on + strand, within IAI46_16850at 3532.380 kb on - strand, within IAI46_16850at 3532.427 kb on + strand, within IAI46_16850at 3532.442 kb on + strand, within IAI46_16850at 3532.471 kb on + strand, within IAI46_16850at 3532.518 kb on - strand, within IAI46_16850at 3532.681 kb on - strand, within IAI46_16850at 3532.797 kb on + strandat 3532.797 kb on + strandat 3532.797 kb on + strandat 3532.797 kb on + strandat 3532.797 kb on + strandat 3532.797 kb on + strandat 3532.797 kb on + strandat 3532.797 kb on + strandat 3532.798 kb on - strandat 3532.798 kb on - strandat 3532.798 kb on - strandat 3532.801 kb on + strandat 3532.801 kb on + strandat 3532.801 kb on + strandat 3532.802 kb on - strandat 3532.802 kb on - strandat 3532.809 kb on + strandat 3532.810 kb on - strandat 3532.844 kb on + strandat 3532.845 kb on - strandat 3532.845 kb on - strandat 3532.943 kb on + strandat 3532.943 kb on + strandat 3532.944 kb on - strandat 3532.973 kb on - strandat 3533.179 kb on + strand, within IAI46_16855at 3533.180 kb on - strand, within IAI46_16855at 3533.180 kb on - strand, within IAI46_16855at 3533.264 kb on + strand, within IAI46_16855at 3533.265 kb on - strand, within IAI46_16855at 3533.300 kb on + strand, within IAI46_16855at 3533.301 kb on - strand, within IAI46_16855at 3533.301 kb on - strand, within IAI46_16855at 3533.326 kb on + strand, within IAI46_16855at 3533.327 kb on - strand, within IAI46_16855at 3533.327 kb on - strand, within IAI46_16855at 3533.450 kb on - strand, within IAI46_16855at 3533.648 kb on - strand, within IAI46_16855at 3533.692 kb on + strand, within IAI46_16855at 3533.693 kb on - strand, within IAI46_16855

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,531,246 + IAI46_16845 0.16 -0.8
3,531,321 - IAI46_16845 0.24 -1.0
3,531,335 + IAI46_16845 0.26 +0.2
3,531,336 - IAI46_16845 0.26 -0.2
3,531,336 - IAI46_16845 0.26 +1.2
3,531,558 + IAI46_16845 0.51 -0.3
3,531,559 - IAI46_16845 0.51 +0.0
3,531,568 + IAI46_16845 0.52 -0.1
3,531,627 - IAI46_16845 0.59 -0.5
3,531,636 - IAI46_16845 0.60 -0.9
3,531,871 + IAI46_16845 0.86 +0.7
3,531,871 + IAI46_16845 0.86 -0.5
3,532,051 + +0.9
3,532,051 + +0.6
3,532,052 - -1.9
3,532,088 - +1.0
3,532,248 + IAI46_16850 0.21 -0.5
3,532,256 + IAI46_16850 0.23 +0.2
3,532,373 + IAI46_16850 0.41 -0.1
3,532,380 - IAI46_16850 0.42 +0.8
3,532,427 + IAI46_16850 0.50 +1.2
3,532,442 + IAI46_16850 0.52 -1.6
3,532,471 + IAI46_16850 0.56 +0.3
3,532,518 - IAI46_16850 0.64 -2.6
3,532,681 - IAI46_16850 0.89 -0.1
3,532,797 + +0.4
3,532,797 + -0.4
3,532,797 + -0.4
3,532,797 + +0.5
3,532,797 + +0.6
3,532,797 + -0.5
3,532,797 + +0.0
3,532,797 + -1.6
3,532,798 - +0.9
3,532,798 - -0.1
3,532,798 - +0.7
3,532,801 + +0.3
3,532,801 + +1.0
3,532,801 + +0.6
3,532,802 - +0.4
3,532,802 - +0.1
3,532,809 + +1.0
3,532,810 - -0.9
3,532,844 + +1.3
3,532,845 - +0.6
3,532,845 - +0.7
3,532,943 + -0.4
3,532,943 + -1.5
3,532,944 - -1.5
3,532,973 - +0.5
3,533,179 + IAI46_16855 0.26 -1.3
3,533,180 - IAI46_16855 0.26 -0.2
3,533,180 - IAI46_16855 0.26 -0.5
3,533,264 + IAI46_16855 0.33 +1.0
3,533,265 - IAI46_16855 0.33 +0.6
3,533,300 + IAI46_16855 0.37 +1.0
3,533,301 - IAI46_16855 0.37 -0.5
3,533,301 - IAI46_16855 0.37 -0.1
3,533,326 + IAI46_16855 0.39 -1.2
3,533,327 - IAI46_16855 0.39 +1.2
3,533,327 - IAI46_16855 0.39 +1.3
3,533,450 - IAI46_16855 0.50 +0.1
3,533,648 - IAI46_16855 0.68 +0.1
3,533,692 + IAI46_16855 0.72 +0.2
3,533,693 - IAI46_16855 0.72 +0.1

Or see this region's nucleotide sequence