Strain Fitness in Serratia liquefaciens MT49 around IAI46_16685

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16680 and IAI46_16685 are separated by 67 nucleotidesIAI46_16685 and IAI46_16690 are separated by 325 nucleotides IAI46_16680: IAI46_16680 - GlxA family transcriptional regulator, at 3,494,233 to 3,495,207 _16680 IAI46_16685: IAI46_16685 - LLM class flavin-dependent oxidoreductase, at 3,495,275 to 3,496,297 _16685 IAI46_16690: IAI46_16690 - thiaminase II, at 3,496,623 to 3,497,303 _16690 Position (kb) 3495 3496 3497Strain fitness (log2 ratio) -2 -1 0 1at 3494.397 kb on - strand, within IAI46_16680at 3494.673 kb on - strand, within IAI46_16680at 3494.749 kb on + strand, within IAI46_16680at 3495.202 kb on - strandat 3495.336 kb on + strandat 3495.337 kb on - strandat 3495.347 kb on + strandat 3495.377 kb on - strandat 3495.441 kb on + strand, within IAI46_16685at 3495.442 kb on - strand, within IAI46_16685at 3495.445 kb on + strand, within IAI46_16685at 3495.446 kb on - strand, within IAI46_16685at 3495.446 kb on - strand, within IAI46_16685at 3495.446 kb on - strand, within IAI46_16685at 3495.446 kb on - strand, within IAI46_16685at 3495.478 kb on + strand, within IAI46_16685at 3495.480 kb on + strand, within IAI46_16685at 3495.480 kb on + strand, within IAI46_16685at 3495.480 kb on + strand, within IAI46_16685at 3495.481 kb on - strand, within IAI46_16685at 3495.827 kb on - strand, within IAI46_16685at 3495.827 kb on - strand, within IAI46_16685at 3495.874 kb on + strand, within IAI46_16685at 3495.919 kb on + strand, within IAI46_16685at 3495.920 kb on - strand, within IAI46_16685at 3495.920 kb on - strand, within IAI46_16685at 3495.920 kb on - strand, within IAI46_16685at 3496.030 kb on + strand, within IAI46_16685at 3496.030 kb on + strand, within IAI46_16685at 3496.030 kb on + strand, within IAI46_16685at 3496.031 kb on - strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.033 kb on - strand, within IAI46_16685at 3496.033 kb on - strand, within IAI46_16685at 3496.310 kb on - strandat 3496.318 kb on + strandat 3496.331 kb on - strandat 3496.365 kb on + strandat 3496.397 kb on + strandat 3496.440 kb on - strandat 3496.448 kb on + strandat 3496.450 kb on + strandat 3496.628 kb on + strandat 3496.636 kb on + strandat 3496.695 kb on + strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.806 kb on + strand, within IAI46_16690at 3496.975 kb on - strand, within IAI46_16690at 3496.975 kb on - strand, within IAI46_16690at 3496.983 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.165 kb on - strand, within IAI46_16690at 3497.165 kb on - strand, within IAI46_16690

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,494,397 - IAI46_16680 0.17 -0.1
3,494,673 - IAI46_16680 0.45 +0.6
3,494,749 + IAI46_16680 0.53 +0.7
3,495,202 - +0.2
3,495,336 + -0.4
3,495,337 - -1.0
3,495,347 + -0.2
3,495,377 - +1.1
3,495,441 + IAI46_16685 0.16 +0.0
3,495,442 - IAI46_16685 0.16 -0.9
3,495,445 + IAI46_16685 0.17 -0.6
3,495,446 - IAI46_16685 0.17 +0.4
3,495,446 - IAI46_16685 0.17 +0.8
3,495,446 - IAI46_16685 0.17 +1.0
3,495,446 - IAI46_16685 0.17 +0.5
3,495,478 + IAI46_16685 0.20 -0.0
3,495,480 + IAI46_16685 0.20 +0.1
3,495,480 + IAI46_16685 0.20 +0.2
3,495,480 + IAI46_16685 0.20 +0.7
3,495,481 - IAI46_16685 0.20 -0.0
3,495,827 - IAI46_16685 0.54 -0.2
3,495,827 - IAI46_16685 0.54 +0.4
3,495,874 + IAI46_16685 0.59 -1.2
3,495,919 + IAI46_16685 0.63 -0.5
3,495,920 - IAI46_16685 0.63 -0.2
3,495,920 - IAI46_16685 0.63 -1.9
3,495,920 - IAI46_16685 0.63 -0.4
3,496,030 + IAI46_16685 0.74 -0.8
3,496,030 + IAI46_16685 0.74 +0.0
3,496,030 + IAI46_16685 0.74 +0.9
3,496,031 - IAI46_16685 0.74 -0.6
3,496,032 + IAI46_16685 0.74 -0.4
3,496,032 + IAI46_16685 0.74 +0.6
3,496,032 + IAI46_16685 0.74 +0.5
3,496,032 + IAI46_16685 0.74 -0.1
3,496,032 + IAI46_16685 0.74 +0.3
3,496,032 + IAI46_16685 0.74 -0.1
3,496,032 + IAI46_16685 0.74 +0.3
3,496,033 - IAI46_16685 0.74 +0.2
3,496,033 - IAI46_16685 0.74 -0.2
3,496,310 - +1.1
3,496,318 + +0.5
3,496,331 - +1.0
3,496,365 + -0.2
3,496,397 + -0.5
3,496,440 - -0.3
3,496,448 + -0.6
3,496,450 + +0.5
3,496,628 + -0.0
3,496,636 + +0.0
3,496,695 + IAI46_16690 0.11 +1.1
3,496,696 - IAI46_16690 0.11 -0.4
3,496,696 - IAI46_16690 0.11 +0.4
3,496,696 - IAI46_16690 0.11 -0.4
3,496,777 - IAI46_16690 0.23 -0.8
3,496,777 - IAI46_16690 0.23 +0.7
3,496,777 - IAI46_16690 0.23 +1.2
3,496,806 + IAI46_16690 0.27 +0.5
3,496,975 - IAI46_16690 0.52 -0.5
3,496,975 - IAI46_16690 0.52 -0.1
3,496,983 + IAI46_16690 0.53 -0.5
3,497,136 + IAI46_16690 0.75 +0.2
3,497,136 + IAI46_16690 0.75 +0.3
3,497,136 + IAI46_16690 0.75 -0.8
3,497,137 - IAI46_16690 0.75 +0.9
3,497,137 - IAI46_16690 0.75 +0.1
3,497,137 - IAI46_16690 0.75 -0.0
3,497,165 - IAI46_16690 0.80 +0.8
3,497,165 - IAI46_16690 0.80 -0.4

Or see this region's nucleotide sequence