Strain Fitness in Serratia liquefaciens MT49 around IAI46_16435

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_16430 and IAI46_16435 are separated by 59 nucleotidesIAI46_16435 and IAI46_16440 are separated by 3 nucleotidesIAI46_16440 and IAI46_16445 are separated by 161 nucleotides IAI46_16430: IAI46_16430 - aspartate/tyrosine/aromatic aminotransferase, at 3,442,650 to 3,443,837 _16430 IAI46_16435: IAI46_16435 - RidA family protein, at 3,443,897 to 3,444,268 _16435 IAI46_16440: IAI46_16440 - alpha/beta hydrolase, at 3,444,272 to 3,445,066 _16440 IAI46_16445: IAI46_16445 - LysR family transcriptional regulator, at 3,445,228 to 3,446,127 _16445 Position (kb) 3443 3444 3445Strain fitness (log2 ratio) -2 -1 0 1 2at 3443.002 kb on + strand, within IAI46_16430at 3443.002 kb on + strand, within IAI46_16430at 3443.098 kb on + strand, within IAI46_16430at 3443.098 kb on + strand, within IAI46_16430at 3443.135 kb on + strand, within IAI46_16430at 3443.209 kb on + strand, within IAI46_16430at 3443.209 kb on + strand, within IAI46_16430at 3443.357 kb on + strand, within IAI46_16430at 3443.404 kb on + strand, within IAI46_16430at 3443.404 kb on + strand, within IAI46_16430at 3443.405 kb on - strand, within IAI46_16430at 3443.510 kb on + strand, within IAI46_16430at 3443.511 kb on - strand, within IAI46_16430at 3443.561 kb on + strand, within IAI46_16430at 3443.732 kb on - strandat 3443.732 kb on - strandat 3443.775 kb on + strandat 3443.780 kb on - strandat 3443.798 kb on + strandat 3443.799 kb on - strandat 3443.799 kb on - strandat 3443.883 kb on - strandat 3443.889 kb on + strandat 3443.893 kb on + strandat 3443.894 kb on - strandat 3444.046 kb on - strand, within IAI46_16435at 3444.062 kb on + strand, within IAI46_16435at 3444.079 kb on + strand, within IAI46_16435at 3444.080 kb on - strand, within IAI46_16435at 3444.291 kb on - strandat 3444.340 kb on + strandat 3444.341 kb on - strandat 3444.342 kb on + strandat 3444.343 kb on - strandat 3444.405 kb on + strand, within IAI46_16440at 3444.408 kb on + strand, within IAI46_16440at 3444.408 kb on + strand, within IAI46_16440at 3444.475 kb on + strand, within IAI46_16440at 3444.475 kb on + strand, within IAI46_16440at 3444.488 kb on - strand, within IAI46_16440at 3444.550 kb on - strand, within IAI46_16440at 3444.557 kb on + strand, within IAI46_16440at 3444.769 kb on + strand, within IAI46_16440at 3444.769 kb on + strand, within IAI46_16440at 3444.770 kb on - strand, within IAI46_16440at 3444.770 kb on - strand, within IAI46_16440at 3444.772 kb on - strand, within IAI46_16440at 3444.821 kb on - strand, within IAI46_16440at 3444.869 kb on - strand, within IAI46_16440at 3444.872 kb on + strand, within IAI46_16440at 3444.872 kb on + strand, within IAI46_16440at 3444.873 kb on - strand, within IAI46_16440at 3444.875 kb on + strand, within IAI46_16440at 3445.021 kb on + strandat 3445.163 kb on + strandat 3445.164 kb on - strandat 3445.164 kb on - strandat 3445.165 kb on + strandat 3445.259 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
3,443,002 + IAI46_16430 0.30 +0.9
3,443,002 + IAI46_16430 0.30 +0.5
3,443,098 + IAI46_16430 0.38 +1.4
3,443,098 + IAI46_16430 0.38 +0.8
3,443,135 + IAI46_16430 0.41 -0.5
3,443,209 + IAI46_16430 0.47 +0.0
3,443,209 + IAI46_16430 0.47 +0.5
3,443,357 + IAI46_16430 0.60 -0.2
3,443,404 + IAI46_16430 0.63 +0.1
3,443,404 + IAI46_16430 0.63 +0.5
3,443,405 - IAI46_16430 0.64 -0.8
3,443,510 + IAI46_16430 0.72 -0.7
3,443,511 - IAI46_16430 0.72 +2.0
3,443,561 + IAI46_16430 0.77 +1.5
3,443,732 - +0.0
3,443,732 - -0.4
3,443,775 + +0.9
3,443,780 - +0.9
3,443,798 + -0.2
3,443,799 - +1.4
3,443,799 - +0.2
3,443,883 - +0.4
3,443,889 + -0.6
3,443,893 + +1.8
3,443,894 - +1.2
3,444,046 - IAI46_16435 0.40 -0.7
3,444,062 + IAI46_16435 0.44 -1.2
3,444,079 + IAI46_16435 0.49 +1.2
3,444,080 - IAI46_16435 0.49 +1.4
3,444,291 - -0.9
3,444,340 + -0.6
3,444,341 - +1.1
3,444,342 + +0.2
3,444,343 - -1.2
3,444,405 + IAI46_16440 0.17 +1.3
3,444,408 + IAI46_16440 0.17 -0.5
3,444,408 + IAI46_16440 0.17 +0.8
3,444,475 + IAI46_16440 0.26 -0.1
3,444,475 + IAI46_16440 0.26 +0.8
3,444,488 - IAI46_16440 0.27 -0.1
3,444,550 - IAI46_16440 0.35 -0.1
3,444,557 + IAI46_16440 0.36 +0.2
3,444,769 + IAI46_16440 0.63 +0.3
3,444,769 + IAI46_16440 0.63 -0.3
3,444,770 - IAI46_16440 0.63 -1.2
3,444,770 - IAI46_16440 0.63 -0.2
3,444,772 - IAI46_16440 0.63 +0.8
3,444,821 - IAI46_16440 0.69 -0.7
3,444,869 - IAI46_16440 0.75 -0.9
3,444,872 + IAI46_16440 0.75 +1.4
3,444,872 + IAI46_16440 0.75 +1.0
3,444,873 - IAI46_16440 0.76 +0.9
3,444,875 + IAI46_16440 0.76 -0.6
3,445,021 + -0.2
3,445,163 + -2.0
3,445,164 - -0.2
3,445,164 - +1.3
3,445,165 + +0.7
3,445,259 - +0.1

Or see this region's nucleotide sequence