Strain Fitness in Serratia liquefaciens MT49 around IAI46_16165

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16155 and IAI46_16160 are separated by 9 nucleotidesIAI46_16160 and IAI46_16165 overlap by 23 nucleotidesIAI46_16165 and IAI46_16170 are separated by 13 nucleotidesIAI46_16170 and IAI46_16175 are separated by 5 nucleotides IAI46_16155: IAI46_16155 - 3-oxoacid CoA-transferase subunit A, at 3,388,069 to 3,388,755 _16155 IAI46_16160: IAI46_16160 - CoA transferase subunit B, at 3,388,765 to 3,389,445 _16160 IAI46_16165: IAI46_16165 - 3-oxoadipyl-CoA thiolase, at 3,389,423 to 3,390,625 _16165 IAI46_16170: IAI46_16170 - 3-oxoadipate enol-lactonase, at 3,390,639 to 3,391,409 _16170 IAI46_16175: IAI46_16175 - glutaredoxin-dependent arsenate reductase, at 3,391,415 to 3,391,846 _16175 Position (kb) 3389 3390 3391Strain fitness (log2 ratio) -1 0 1 2at 3388.430 kb on - strand, within IAI46_16155at 3388.498 kb on + strand, within IAI46_16155at 3388.498 kb on + strand, within IAI46_16155at 3388.499 kb on - strand, within IAI46_16155at 3388.577 kb on - strand, within IAI46_16155at 3388.578 kb on + strand, within IAI46_16155at 3388.645 kb on - strand, within IAI46_16155at 3388.690 kb on - strandat 3388.690 kb on - strandat 3388.706 kb on + strandat 3388.754 kb on - strandat 3388.754 kb on - strandat 3388.777 kb on - strandat 3388.777 kb on - strandat 3388.870 kb on + strand, within IAI46_16160at 3388.871 kb on - strand, within IAI46_16160at 3388.871 kb on - strand, within IAI46_16160at 3389.080 kb on + strand, within IAI46_16160at 3389.080 kb on + strand, within IAI46_16160at 3389.249 kb on - strand, within IAI46_16160at 3389.435 kb on + strandat 3389.435 kb on + strandat 3390.385 kb on + strand, within IAI46_16165at 3390.567 kb on + strandat 3390.567 kb on + strandat 3390.580 kb on + strandat 3390.773 kb on + strand, within IAI46_16170at 3390.773 kb on + strand, within IAI46_16170at 3390.774 kb on - strand, within IAI46_16170at 3390.774 kb on - strand, within IAI46_16170at 3390.807 kb on - strand, within IAI46_16170at 3390.872 kb on - strand, within IAI46_16170at 3391.155 kb on + strand, within IAI46_16170at 3391.561 kb on + strand, within IAI46_16175at 3391.562 kb on - strand, within IAI46_16175at 3391.562 kb on - strand, within IAI46_16175at 3391.562 kb on - strand, within IAI46_16175at 3391.571 kb on - strand, within IAI46_16175at 3391.595 kb on - strand, within IAI46_16175at 3391.595 kb on - strand, within IAI46_16175

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,388,430 - IAI46_16155 0.53 +1.7
3,388,498 + IAI46_16155 0.62 -0.7
3,388,498 + IAI46_16155 0.62 +0.1
3,388,499 - IAI46_16155 0.63 +0.4
3,388,577 - IAI46_16155 0.74 +1.3
3,388,578 + IAI46_16155 0.74 +0.2
3,388,645 - IAI46_16155 0.84 +1.1
3,388,690 - -0.2
3,388,690 - -0.0
3,388,706 + -0.7
3,388,754 - -0.0
3,388,754 - +0.7
3,388,777 - -0.0
3,388,777 - -0.2
3,388,870 + IAI46_16160 0.15 -0.1
3,388,871 - IAI46_16160 0.16 -0.9
3,388,871 - IAI46_16160 0.16 +0.2
3,389,080 + IAI46_16160 0.46 +0.2
3,389,080 + IAI46_16160 0.46 -0.2
3,389,249 - IAI46_16160 0.71 -0.8
3,389,435 + -0.5
3,389,435 + +1.3
3,390,385 + IAI46_16165 0.80 -0.3
3,390,567 + -0.7
3,390,567 + +1.2
3,390,580 + -0.3
3,390,773 + IAI46_16170 0.17 -0.6
3,390,773 + IAI46_16170 0.17 +1.9
3,390,774 - IAI46_16170 0.18 +0.4
3,390,774 - IAI46_16170 0.18 +0.0
3,390,807 - IAI46_16170 0.22 +0.7
3,390,872 - IAI46_16170 0.30 +1.1
3,391,155 + IAI46_16170 0.67 +0.4
3,391,561 + IAI46_16175 0.34 +0.1
3,391,562 - IAI46_16175 0.34 -1.1
3,391,562 - IAI46_16175 0.34 +0.9
3,391,562 - IAI46_16175 0.34 -0.5
3,391,571 - IAI46_16175 0.36 +0.5
3,391,595 - IAI46_16175 0.42 -0.7
3,391,595 - IAI46_16175 0.42 -0.4

Or see this region's nucleotide sequence