Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_15875 and IAI46_15880 overlap by 4 nucleotides IAI46_15880 and IAI46_15885 overlap by 1 nucleotides IAI46_15885 and IAI46_15890 are separated by 47 nucleotides IAI46_15890 and IAI46_15895 are separated by 35 nucleotides IAI46_15895 and IAI46_15900 are separated by 2 nucleotides
IAI46_15875: IAI46_15875 - flagellar motor switch protein FliM, at 3,334,392 to 3,335,393
_15875
IAI46_15880: IAI46_15880 - flagellar motor switch protein FliN, at 3,335,390 to 3,335,803
_15880
IAI46_15885: IAI46_15885 - flagellar biosynthetic protein FliO, at 3,335,803 to 3,336,207
_15885
IAI46_15890: IAI46_15890 - flagellar type III secretion system pore protein FliP, at 3,336,255 to 3,336,980
_15890
IAI46_15895: IAI46_15895 - flagellar biosynthesis protein FliQ, at 3,337,016 to 3,337,285
_15895
IAI46_15900: IAI46_15900 - flagellar type III secretion system protein FliR, at 3,337,288 to 3,338,070
_15900
Position (kb)
3336
3337 Strain fitness (log2 ratio)
-1
0
1 at 3335.314 kb on + strand at 3335.352 kb on - strand at 3335.358 kb on - strand at 3335.401 kb on + strand at 3335.402 kb on - strand at 3335.402 kb on - strand at 3335.402 kb on - strand at 3335.402 kb on - strand at 3335.684 kb on - strand, within IAI46_15880 at 3335.755 kb on + strand, within IAI46_15880 at 3336.100 kb on - strand, within IAI46_15885 at 3336.277 kb on + strand at 3336.278 kb on - strand at 3336.579 kb on + strand, within IAI46_15890 at 3336.580 kb on - strand, within IAI46_15890 at 3336.580 kb on - strand, within IAI46_15890 at 3336.580 kb on - strand, within IAI46_15890 at 3336.580 kb on - strand, within IAI46_15890 at 3336.762 kb on + strand, within IAI46_15890 at 3336.762 kb on + strand, within IAI46_15890 at 3337.241 kb on + strand, within IAI46_15895 at 3337.241 kb on + strand, within IAI46_15895 at 3337.242 kb on - strand, within IAI46_15895 at 3337.242 kb on - strand, within IAI46_15895 at 3337.243 kb on + strand, within IAI46_15895 at 3337.243 kb on + strand, within IAI46_15895 at 3337.244 kb on - strand, within IAI46_15895 at 3337.966 kb on - strand, within IAI46_15900 at 3337.966 kb on - strand, within IAI46_15900
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic remove 3,335,314 + -0.8 3,335,352 - +1.0 3,335,358 - +0.2 3,335,401 + +0.1 3,335,402 - +0.3 3,335,402 - +0.8 3,335,402 - -0.2 3,335,402 - +0.3 3,335,684 - IAI46_15880 0.71 -0.1 3,335,755 + IAI46_15880 0.88 +0.7 3,336,100 - IAI46_15885 0.73 +0.7 3,336,277 + -0.6 3,336,278 - +1.5 3,336,579 + IAI46_15890 0.45 +0.1 3,336,580 - IAI46_15890 0.45 +1.0 3,336,580 - IAI46_15890 0.45 +0.2 3,336,580 - IAI46_15890 0.45 -0.2 3,336,580 - IAI46_15890 0.45 +1.2 3,336,762 + IAI46_15890 0.70 +0.3 3,336,762 + IAI46_15890 0.70 -0.3 3,337,241 + IAI46_15895 0.83 -0.5 3,337,241 + IAI46_15895 0.83 +0.6 3,337,242 - IAI46_15895 0.84 +1.0 3,337,242 - IAI46_15895 0.84 -0.8 3,337,243 + IAI46_15895 0.84 +0.4 3,337,243 + IAI46_15895 0.84 +1.7 3,337,244 - IAI46_15895 0.84 +1.5 3,337,966 - IAI46_15900 0.87 +0.8 3,337,966 - IAI46_15900 0.87 -0.1
Or see this region's nucleotide sequence