Strain Fitness in Serratia liquefaciens MT49 around IAI46_15890

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15875 and IAI46_15880 overlap by 4 nucleotidesIAI46_15880 and IAI46_15885 overlap by 1 nucleotidesIAI46_15885 and IAI46_15890 are separated by 47 nucleotidesIAI46_15890 and IAI46_15895 are separated by 35 nucleotidesIAI46_15895 and IAI46_15900 are separated by 2 nucleotides IAI46_15875: IAI46_15875 - flagellar motor switch protein FliM, at 3,334,392 to 3,335,393 _15875 IAI46_15880: IAI46_15880 - flagellar motor switch protein FliN, at 3,335,390 to 3,335,803 _15880 IAI46_15885: IAI46_15885 - flagellar biosynthetic protein FliO, at 3,335,803 to 3,336,207 _15885 IAI46_15890: IAI46_15890 - flagellar type III secretion system pore protein FliP, at 3,336,255 to 3,336,980 _15890 IAI46_15895: IAI46_15895 - flagellar biosynthesis protein FliQ, at 3,337,016 to 3,337,285 _15895 IAI46_15900: IAI46_15900 - flagellar type III secretion system protein FliR, at 3,337,288 to 3,338,070 _15900 Position (kb) 3336 3337Strain fitness (log2 ratio) -1 0 1at 3335.314 kb on + strandat 3335.352 kb on - strandat 3335.358 kb on - strandat 3335.401 kb on + strandat 3335.402 kb on - strandat 3335.402 kb on - strandat 3335.402 kb on - strandat 3335.402 kb on - strandat 3335.684 kb on - strand, within IAI46_15880at 3335.755 kb on + strand, within IAI46_15880at 3336.100 kb on - strand, within IAI46_15885at 3336.277 kb on + strandat 3336.278 kb on - strandat 3336.579 kb on + strand, within IAI46_15890at 3336.580 kb on - strand, within IAI46_15890at 3336.580 kb on - strand, within IAI46_15890at 3336.580 kb on - strand, within IAI46_15890at 3336.580 kb on - strand, within IAI46_15890at 3336.762 kb on + strand, within IAI46_15890at 3336.762 kb on + strand, within IAI46_15890at 3337.241 kb on + strand, within IAI46_15895at 3337.241 kb on + strand, within IAI46_15895at 3337.242 kb on - strand, within IAI46_15895at 3337.242 kb on - strand, within IAI46_15895at 3337.243 kb on + strand, within IAI46_15895at 3337.243 kb on + strand, within IAI46_15895at 3337.244 kb on - strand, within IAI46_15895at 3337.966 kb on - strand, within IAI46_15900at 3337.966 kb on - strand, within IAI46_15900

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,335,314 + -0.8
3,335,352 - +1.0
3,335,358 - +0.2
3,335,401 + +0.1
3,335,402 - +0.3
3,335,402 - +0.8
3,335,402 - -0.2
3,335,402 - +0.3
3,335,684 - IAI46_15880 0.71 -0.1
3,335,755 + IAI46_15880 0.88 +0.7
3,336,100 - IAI46_15885 0.73 +0.7
3,336,277 + -0.6
3,336,278 - +1.5
3,336,579 + IAI46_15890 0.45 +0.1
3,336,580 - IAI46_15890 0.45 +1.0
3,336,580 - IAI46_15890 0.45 +0.2
3,336,580 - IAI46_15890 0.45 -0.2
3,336,580 - IAI46_15890 0.45 +1.2
3,336,762 + IAI46_15890 0.70 +0.3
3,336,762 + IAI46_15890 0.70 -0.3
3,337,241 + IAI46_15895 0.83 -0.5
3,337,241 + IAI46_15895 0.83 +0.6
3,337,242 - IAI46_15895 0.84 +1.0
3,337,242 - IAI46_15895 0.84 -0.8
3,337,243 + IAI46_15895 0.84 +0.4
3,337,243 + IAI46_15895 0.84 +1.7
3,337,244 - IAI46_15895 0.84 +1.5
3,337,966 - IAI46_15900 0.87 +0.8
3,337,966 - IAI46_15900 0.87 -0.1

Or see this region's nucleotide sequence