Strain Fitness in Serratia liquefaciens MT49 around IAI46_12745

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12740 and IAI46_12745 are separated by 152 nucleotidesIAI46_12745 and IAI46_12750 are separated by 50 nucleotides IAI46_12740: IAI46_12740 - LysR family transcriptional regulator, at 2,711,621 to 2,712,484 _12740 IAI46_12745: IAI46_12745 - gamma-glutamyltransferase, at 2,712,637 to 2,714,310 _12745 IAI46_12750: IAI46_12750 - DUF3857 domain-containing protein, at 2,714,361 to 2,716,304 _12750 Position (kb) 2712 2713 2714 2715Strain fitness (log2 ratio) -2 -1 0 1 2at 2711.960 kb on - strand, within IAI46_12740at 2712.085 kb on + strand, within IAI46_12740at 2712.085 kb on + strand, within IAI46_12740at 2712.460 kb on - strandat 2712.460 kb on - strandat 2712.490 kb on + strandat 2712.491 kb on - strandat 2712.539 kb on + strandat 2712.539 kb on + strandat 2712.540 kb on - strandat 2712.581 kb on - strandat 2712.636 kb on + strandat 2712.637 kb on - strandat 2712.748 kb on + strandat 2712.749 kb on - strandat 2712.952 kb on + strand, within IAI46_12745at 2712.952 kb on + strand, within IAI46_12745at 2712.953 kb on - strand, within IAI46_12745at 2713.028 kb on + strand, within IAI46_12745at 2713.288 kb on + strand, within IAI46_12745at 2713.289 kb on - strand, within IAI46_12745at 2713.370 kb on - strand, within IAI46_12745at 2713.424 kb on - strand, within IAI46_12745at 2713.425 kb on + strand, within IAI46_12745at 2713.531 kb on + strand, within IAI46_12745at 2713.542 kb on - strand, within IAI46_12745at 2713.774 kb on - strand, within IAI46_12745at 2713.777 kb on + strand, within IAI46_12745at 2714.050 kb on + strand, within IAI46_12745at 2714.057 kb on - strand, within IAI46_12745at 2714.057 kb on - strand, within IAI46_12745at 2714.131 kb on + strand, within IAI46_12745at 2714.189 kb on - strandat 2714.213 kb on - strandat 2714.225 kb on + strandat 2714.226 kb on - strandat 2714.226 kb on - strandat 2714.384 kb on + strandat 2714.415 kb on + strandat 2714.416 kb on - strandat 2714.662 kb on + strand, within IAI46_12750at 2714.663 kb on - strand, within IAI46_12750at 2714.697 kb on - strand, within IAI46_12750at 2714.791 kb on + strand, within IAI46_12750at 2714.792 kb on - strand, within IAI46_12750at 2714.812 kb on + strand, within IAI46_12750at 2714.812 kb on + strand, within IAI46_12750at 2715.005 kb on + strand, within IAI46_12750at 2715.197 kb on - strand, within IAI46_12750at 2715.197 kb on - strand, within IAI46_12750

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,711,960 - IAI46_12740 0.39 -0.8
2,712,085 + IAI46_12740 0.54 -0.1
2,712,085 + IAI46_12740 0.54 +0.2
2,712,460 - +0.6
2,712,460 - -1.0
2,712,490 + +0.0
2,712,491 - -0.7
2,712,539 + +1.7
2,712,539 + +0.0
2,712,540 - -0.0
2,712,581 - -1.3
2,712,636 + +0.4
2,712,637 - +1.0
2,712,748 + +0.5
2,712,749 - +0.3
2,712,952 + IAI46_12745 0.19 -0.3
2,712,952 + IAI46_12745 0.19 +1.2
2,712,953 - IAI46_12745 0.19 -0.0
2,713,028 + IAI46_12745 0.23 +1.2
2,713,288 + IAI46_12745 0.39 -1.1
2,713,289 - IAI46_12745 0.39 -0.5
2,713,370 - IAI46_12745 0.44 -1.5
2,713,424 - IAI46_12745 0.47 -0.4
2,713,425 + IAI46_12745 0.47 -0.6
2,713,531 + IAI46_12745 0.53 +0.2
2,713,542 - IAI46_12745 0.54 +0.0
2,713,774 - IAI46_12745 0.68 +0.9
2,713,777 + IAI46_12745 0.68 +0.5
2,714,050 + IAI46_12745 0.84 +1.0
2,714,057 - IAI46_12745 0.85 +0.2
2,714,057 - IAI46_12745 0.85 -1.1
2,714,131 + IAI46_12745 0.89 +0.2
2,714,189 - -0.5
2,714,213 - +1.9
2,714,225 + -1.8
2,714,226 - +0.6
2,714,226 - +1.3
2,714,384 + +0.4
2,714,415 + -0.2
2,714,416 - +1.4
2,714,662 + IAI46_12750 0.15 +0.8
2,714,663 - IAI46_12750 0.16 -0.3
2,714,697 - IAI46_12750 0.17 +1.1
2,714,791 + IAI46_12750 0.22 +0.5
2,714,792 - IAI46_12750 0.22 -2.2
2,714,812 + IAI46_12750 0.23 +0.0
2,714,812 + IAI46_12750 0.23 -0.5
2,715,005 + IAI46_12750 0.33 -0.3
2,715,197 - IAI46_12750 0.43 +0.6
2,715,197 - IAI46_12750 0.43 +0.1

Or see this region's nucleotide sequence