Strain Fitness in Serratia liquefaciens MT49 around IAI46_12200

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12190 and IAI46_12195 are separated by 565 nucleotidesIAI46_12195 and IAI46_12200 are separated by 56 nucleotidesIAI46_12200 and IAI46_12205 are separated by 37 nucleotidesIAI46_12205 and IAI46_12210 are separated by 240 nucleotides IAI46_12190: IAI46_12190 - hypothetical protein, at 2,585,559 to 2,586,083 _12190 IAI46_12195: IAI46_12195 - CopG family transcriptional regulator, at 2,586,649 to 2,586,843 _12195 IAI46_12200: IAI46_12200 - fused MFS/spermidine synthase, at 2,586,900 to 2,587,688 _12200 IAI46_12205: IAI46_12205 - 3-hydroxyacyl-ACP dehydratase FabZ, at 2,587,726 to 2,588,181 _12205 IAI46_12210: IAI46_12210 - TIGR00645 family protein, at 2,588,422 to 2,588,916 _12210 Position (kb) 2586 2587 2588Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2586.166 kb on - strandat 2586.452 kb on - strandat 2586.511 kb on + strandat 2586.538 kb on - strandat 2586.719 kb on + strand, within IAI46_12195at 2586.728 kb on - strand, within IAI46_12195at 2586.728 kb on - strand, within IAI46_12195at 2586.865 kb on + strandat 2586.893 kb on + strandat 2586.905 kb on + strandat 2586.937 kb on + strandat 2586.937 kb on + strandat 2587.028 kb on - strand, within IAI46_12200at 2587.028 kb on - strand, within IAI46_12200at 2587.087 kb on - strand, within IAI46_12200at 2587.129 kb on + strand, within IAI46_12200at 2587.138 kb on - strand, within IAI46_12200at 2587.310 kb on + strand, within IAI46_12200at 2587.388 kb on + strand, within IAI46_12200at 2587.389 kb on - strand, within IAI46_12200at 2587.399 kb on + strand, within IAI46_12200at 2587.400 kb on - strand, within IAI46_12200at 2587.498 kb on + strand, within IAI46_12200at 2587.499 kb on - strand, within IAI46_12200at 2587.499 kb on - strand, within IAI46_12200at 2587.503 kb on - strand, within IAI46_12200at 2587.599 kb on - strand, within IAI46_12200at 2587.665 kb on + strandat 2587.688 kb on + strandat 2587.689 kb on - strandat 2587.689 kb on - strandat 2587.727 kb on + strandat 2587.727 kb on + strandat 2587.727 kb on + strandat 2587.728 kb on - strandat 2587.728 kb on - strandat 2587.728 kb on - strandat 2587.901 kb on + strand, within IAI46_12205at 2587.902 kb on - strand, within IAI46_12205at 2587.981 kb on + strand, within IAI46_12205at 2588.044 kb on - strand, within IAI46_12205at 2588.059 kb on - strand, within IAI46_12205at 2588.256 kb on + strandat 2588.257 kb on - strandat 2588.264 kb on + strandat 2588.362 kb on - strandat 2588.501 kb on + strand, within IAI46_12210at 2588.502 kb on - strand, within IAI46_12210at 2588.502 kb on - strand, within IAI46_12210

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,586,166 - -0.3
2,586,452 - -0.1
2,586,511 + -0.1
2,586,538 - +0.4
2,586,719 + IAI46_12195 0.36 -0.5
2,586,728 - IAI46_12195 0.41 -0.5
2,586,728 - IAI46_12195 0.41 -0.6
2,586,865 + -1.4
2,586,893 + -0.3
2,586,905 + -1.7
2,586,937 + +0.5
2,586,937 + -0.4
2,587,028 - IAI46_12200 0.16 +1.0
2,587,028 - IAI46_12200 0.16 +0.5
2,587,087 - IAI46_12200 0.24 -0.3
2,587,129 + IAI46_12200 0.29 +0.1
2,587,138 - IAI46_12200 0.30 +2.2
2,587,310 + IAI46_12200 0.52 +2.8
2,587,388 + IAI46_12200 0.62 -0.8
2,587,389 - IAI46_12200 0.62 +0.5
2,587,399 + IAI46_12200 0.63 -1.1
2,587,400 - IAI46_12200 0.63 +0.6
2,587,498 + IAI46_12200 0.76 +1.0
2,587,499 - IAI46_12200 0.76 -1.1
2,587,499 - IAI46_12200 0.76 +0.6
2,587,503 - IAI46_12200 0.76 +0.9
2,587,599 - IAI46_12200 0.89 +1.0
2,587,665 + +0.4
2,587,688 + -0.2
2,587,689 - -0.4
2,587,689 - +0.5
2,587,727 + +0.9
2,587,727 + +0.5
2,587,727 + -0.3
2,587,728 - +0.8
2,587,728 - -0.0
2,587,728 - -0.1
2,587,901 + IAI46_12205 0.38 -0.3
2,587,902 - IAI46_12205 0.39 -0.2
2,587,981 + IAI46_12205 0.56 +0.5
2,588,044 - IAI46_12205 0.70 +2.1
2,588,059 - IAI46_12205 0.73 +0.2
2,588,256 + +0.6
2,588,257 - +0.5
2,588,264 + -1.5
2,588,362 - +0.3
2,588,501 + IAI46_12210 0.16 +0.9
2,588,502 - IAI46_12210 0.16 -0.2
2,588,502 - IAI46_12210 0.16 -1.8

Or see this region's nucleotide sequence