Strain Fitness in Serratia liquefaciens MT49 around IAI46_11985

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_11980 and IAI46_11985 are separated by 17 nucleotidesIAI46_11985 and IAI46_11990 are separated by 409 nucleotidesIAI46_11990 and IAI46_11995 are separated by 10 nucleotides IAI46_11980: IAI46_11980 - helix-turn-helix transcriptional regulator, at 2,537,379 to 2,538,248 _11980 IAI46_11985: IAI46_11985 - glyoxalase/bleomycin resistance/dioxygenase family protein, at 2,538,266 to 2,538,703 _11985 IAI46_11990: IAI46_11990 - MoaF N-terminal domain-containing protein, at 2,539,113 to 2,539,472 _11990 IAI46_11995: IAI46_11995 - ester cyclase, at 2,539,483 to 2,539,971 _11995 Position (kb) 2538 2539Strain fitness (log2 ratio) -1 0 1 2at 2537.326 kb on - strandat 2537.389 kb on - strandat 2537.389 kb on - strandat 2537.417 kb on + strandat 2537.417 kb on + strandat 2537.493 kb on - strand, within IAI46_11980at 2537.519 kb on + strand, within IAI46_11980at 2537.520 kb on - strand, within IAI46_11980at 2537.556 kb on + strand, within IAI46_11980at 2537.674 kb on - strand, within IAI46_11980at 2537.678 kb on + strand, within IAI46_11980at 2537.679 kb on - strand, within IAI46_11980at 2537.993 kb on - strand, within IAI46_11980at 2538.211 kb on - strandat 2538.246 kb on + strandat 2538.404 kb on + strand, within IAI46_11985at 2538.717 kb on - strandat 2538.744 kb on - strandat 2538.770 kb on - strandat 2538.794 kb on - strandat 2538.836 kb on - strandat 2538.955 kb on + strandat 2538.955 kb on + strandat 2538.957 kb on + strandat 2539.058 kb on - strandat 2539.081 kb on + strandat 2539.122 kb on - strandat 2539.288 kb on - strand, within IAI46_11990at 2539.288 kb on - strand, within IAI46_11990at 2539.303 kb on + strand, within IAI46_11990at 2539.392 kb on + strand, within IAI46_11990at 2539.453 kb on + strandat 2539.479 kb on + strandat 2539.480 kb on - strandat 2539.521 kb on + strandat 2539.521 kb on + strandat 2539.535 kb on - strand, within IAI46_11995at 2539.701 kb on + strand, within IAI46_11995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
2,537,326 - -0.5
2,537,389 - -0.1
2,537,389 - -0.8
2,537,417 + +0.6
2,537,417 + +0.0
2,537,493 - IAI46_11980 0.13 +0.3
2,537,519 + IAI46_11980 0.16 +0.1
2,537,520 - IAI46_11980 0.16 -1.0
2,537,556 + IAI46_11980 0.20 -0.4
2,537,674 - IAI46_11980 0.34 -1.5
2,537,678 + IAI46_11980 0.34 +1.5
2,537,679 - IAI46_11980 0.34 -0.1
2,537,993 - IAI46_11980 0.71 +0.5
2,538,211 - +0.2
2,538,246 + -1.1
2,538,404 + IAI46_11985 0.32 +0.2
2,538,717 - +1.1
2,538,744 - -0.6
2,538,770 - -0.1
2,538,794 - -0.3
2,538,836 - -1.3
2,538,955 + +0.2
2,538,955 + +1.2
2,538,957 + -0.1
2,539,058 - +0.1
2,539,081 + +0.3
2,539,122 - +0.0
2,539,288 - IAI46_11990 0.49 -0.8
2,539,288 - IAI46_11990 0.49 +0.5
2,539,303 + IAI46_11990 0.53 +0.4
2,539,392 + IAI46_11990 0.78 +0.9
2,539,453 + +1.1
2,539,479 + +2.2
2,539,480 - +1.1
2,539,521 + -0.1
2,539,521 + +0.8
2,539,535 - IAI46_11995 0.11 +0.5
2,539,701 + IAI46_11995 0.45 -0.1

Or see this region's nucleotide sequence