Strain Fitness in Serratia liquefaciens MT49 around IAI46_11505

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11500 and IAI46_11505 are separated by 34 nucleotidesIAI46_11505 and IAI46_11510 are separated by 361 nucleotides IAI46_11500: IAI46_11500 - L-arabinose isomerase, at 2,426,543 to 2,428,048 _11500 IAI46_11505: IAI46_11505 - ribulokinase, at 2,428,083 to 2,429,768 _11505 IAI46_11510: IAI46_11510 - arabinose ABC transporter substrate-binding protein, at 2,430,130 to 2,431,113 _11510 Position (kb) 2428 2429 2430Strain fitness (log2 ratio) -1 0 1at 2427.238 kb on + strand, within IAI46_11500at 2427.239 kb on - strand, within IAI46_11500at 2427.423 kb on + strand, within IAI46_11500at 2427.423 kb on + strand, within IAI46_11500at 2427.757 kb on + strand, within IAI46_11500at 2427.758 kb on - strand, within IAI46_11500at 2427.844 kb on - strand, within IAI46_11500at 2427.993 kb on + strandat 2428.395 kb on + strand, within IAI46_11505at 2428.396 kb on - strand, within IAI46_11505at 2428.396 kb on - strand, within IAI46_11505at 2428.396 kb on - strand, within IAI46_11505at 2428.412 kb on + strand, within IAI46_11505at 2428.469 kb on + strand, within IAI46_11505at 2428.546 kb on + strand, within IAI46_11505at 2428.651 kb on - strand, within IAI46_11505at 2428.736 kb on - strand, within IAI46_11505at 2428.736 kb on - strand, within IAI46_11505at 2428.736 kb on - strand, within IAI46_11505at 2428.898 kb on + strand, within IAI46_11505at 2428.898 kb on + strand, within IAI46_11505at 2428.899 kb on - strand, within IAI46_11505at 2428.901 kb on - strand, within IAI46_11505at 2428.901 kb on - strand, within IAI46_11505at 2428.932 kb on - strand, within IAI46_11505at 2429.074 kb on - strand, within IAI46_11505at 2429.148 kb on + strand, within IAI46_11505at 2429.148 kb on + strand, within IAI46_11505at 2429.309 kb on - strand, within IAI46_11505at 2429.589 kb on - strand, within IAI46_11505at 2429.590 kb on + strand, within IAI46_11505at 2429.591 kb on - strand, within IAI46_11505at 2429.591 kb on - strand, within IAI46_11505at 2429.591 kb on - strand, within IAI46_11505at 2429.753 kb on + strandat 2429.790 kb on - strandat 2429.792 kb on + strandat 2429.793 kb on - strandat 2429.793 kb on - strandat 2429.808 kb on + strandat 2429.808 kb on + strandat 2429.901 kb on + strandat 2429.925 kb on + strandat 2429.925 kb on + strandat 2429.926 kb on - strandat 2429.927 kb on + strandat 2429.928 kb on - strandat 2429.935 kb on + strandat 2429.936 kb on - strandat 2430.045 kb on + strandat 2430.065 kb on + strandat 2430.177 kb on + strandat 2430.306 kb on + strand, within IAI46_11510at 2430.496 kb on - strand, within IAI46_11510at 2430.663 kb on + strand, within IAI46_11510

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,427,238 + IAI46_11500 0.46 -0.3
2,427,239 - IAI46_11500 0.46 -0.5
2,427,423 + IAI46_11500 0.58 -0.7
2,427,423 + IAI46_11500 0.58 -0.6
2,427,757 + IAI46_11500 0.81 +0.3
2,427,758 - IAI46_11500 0.81 +0.5
2,427,844 - IAI46_11500 0.86 -0.2
2,427,993 + +0.9
2,428,395 + IAI46_11505 0.19 -1.0
2,428,396 - IAI46_11505 0.19 -0.2
2,428,396 - IAI46_11505 0.19 -0.3
2,428,396 - IAI46_11505 0.19 +0.6
2,428,412 + IAI46_11505 0.20 +0.8
2,428,469 + IAI46_11505 0.23 -0.6
2,428,546 + IAI46_11505 0.27 -0.5
2,428,651 - IAI46_11505 0.34 -1.5
2,428,736 - IAI46_11505 0.39 -0.5
2,428,736 - IAI46_11505 0.39 +0.3
2,428,736 - IAI46_11505 0.39 -0.5
2,428,898 + IAI46_11505 0.48 +1.0
2,428,898 + IAI46_11505 0.48 +1.5
2,428,899 - IAI46_11505 0.48 +0.1
2,428,901 - IAI46_11505 0.49 -0.3
2,428,901 - IAI46_11505 0.49 +0.1
2,428,932 - IAI46_11505 0.50 +1.5
2,429,074 - IAI46_11505 0.59 -0.0
2,429,148 + IAI46_11505 0.63 -0.7
2,429,148 + IAI46_11505 0.63 -0.6
2,429,309 - IAI46_11505 0.73 +1.5
2,429,589 - IAI46_11505 0.89 +1.5
2,429,590 + IAI46_11505 0.89 -0.4
2,429,591 - IAI46_11505 0.89 +0.8
2,429,591 - IAI46_11505 0.89 -0.1
2,429,591 - IAI46_11505 0.89 +0.5
2,429,753 + -0.3
2,429,790 - -0.4
2,429,792 + -0.5
2,429,793 - +0.7
2,429,793 - -0.8
2,429,808 + +0.5
2,429,808 + +0.2
2,429,901 + +0.2
2,429,925 + -0.8
2,429,925 + +1.1
2,429,926 - +0.1
2,429,927 + -0.0
2,429,928 - +0.5
2,429,935 + -0.2
2,429,936 - +0.4
2,430,045 + +0.2
2,430,065 + -0.0
2,430,177 + +0.4
2,430,306 + IAI46_11510 0.18 +0.3
2,430,496 - IAI46_11510 0.37 -0.5
2,430,663 + IAI46_11510 0.54 +1.3

Or see this region's nucleotide sequence