Strain Fitness in Serratia liquefaciens MT49 around IAI46_11195

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11185 and IAI46_11190 are separated by 404 nucleotidesIAI46_11190 and IAI46_11195 are separated by 123 nucleotidesIAI46_11195 and IAI46_11200 are separated by 20 nucleotidesIAI46_11200 and IAI46_11205 are separated by 20 nucleotidesIAI46_11205 and IAI46_11210 are separated by 189 nucleotides IAI46_11185: IAI46_11185 - pyruvate kinase PykF, at 2,364,719 to 2,366,131 _11185 IAI46_11190: IAI46_11190 - cupin, at 2,366,536 to 2,366,841 _11190 IAI46_11195: IAI46_11195 - tRNA-Val, at 2,366,965 to 2,367,041 _11195 IAI46_11200: IAI46_11200 - tRNA-Val, at 2,367,062 to 2,367,138 _11200 IAI46_11205: IAI46_11205 - tRNA-Val, at 2,367,159 to 2,367,235 _11205 IAI46_11210: IAI46_11210 - MATE family efflux transporter, at 2,367,425 to 2,368,801 _11210 Position (kb) 2366 2367 2368Strain fitness (log2 ratio) -1 0 1at 2366.043 kb on - strandat 2366.043 kb on - strandat 2366.232 kb on - strandat 2366.389 kb on - strandat 2366.391 kb on - strandat 2366.511 kb on - strandat 2366.862 kb on - strandat 2366.876 kb on + strandat 2366.877 kb on - strandat 2366.913 kb on - strandat 2367.021 kb on - strand, within IAI46_11195at 2367.144 kb on - strandat 2367.144 kb on - strandat 2367.422 kb on + strandat 2367.482 kb on - strandat 2367.482 kb on - strandat 2367.649 kb on + strand, within IAI46_11210at 2367.655 kb on + strand, within IAI46_11210at 2367.656 kb on - strand, within IAI46_11210at 2367.656 kb on - strand, within IAI46_11210at 2367.768 kb on + strand, within IAI46_11210

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,366,043 - +1.6
2,366,043 - +0.6
2,366,232 - +0.9
2,366,389 - +1.6
2,366,391 - +0.1
2,366,511 - +0.1
2,366,862 - +0.1
2,366,876 + +0.6
2,366,877 - +0.1
2,366,913 - -0.1
2,367,021 - IAI46_11195 0.73 +0.3
2,367,144 - +0.2
2,367,144 - +0.3
2,367,422 + +0.3
2,367,482 - +0.7
2,367,482 - +0.4
2,367,649 + IAI46_11210 0.16 -0.1
2,367,655 + IAI46_11210 0.17 +0.2
2,367,656 - IAI46_11210 0.17 +0.1
2,367,656 - IAI46_11210 0.17 +0.1
2,367,768 + IAI46_11210 0.25 +0.2

Or see this region's nucleotide sequence